View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0834_low_47 (Length: 251)

Name: NF0834_low_47
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0834_low_47
NF0834_low_47
[»] chr1 (2 HSPs)
chr1 (22-251)||(52082617-52082846)
chr1 (22-247)||(52092813-52093044)
[»] chr5 (3 HSPs)
chr5 (22-106)||(41889533-41889617)
chr5 (22-83)||(32267511-32267572)
chr5 (22-78)||(41901542-41901598)
[»] chr8 (6 HSPs)
chr8 (22-83)||(18315275-18315336)
chr8 (22-83)||(27922544-27922605)
chr8 (41-83)||(17636403-17636445)
chr8 (41-107)||(28246273-28246339)
chr8 (41-81)||(17628018-17628058)
chr8 (41-81)||(21235613-21235653)
[»] chr4 (5 HSPs)
chr4 (22-83)||(7307896-7307957)
chr4 (23-83)||(8187093-8187153)
chr4 (29-64)||(1754554-1754589)
chr4 (22-96)||(532225-532299)
chr4 (127-173)||(1754624-1754670)
[»] chr3 (2 HSPs)
chr3 (22-79)||(33714861-33714918)
chr3 (42-83)||(51120895-51120936)
[»] chr6 (4 HSPs)
chr6 (34-84)||(6423265-6423315)
chr6 (41-106)||(11936254-11936319)
chr6 (41-106)||(11948234-11948299)
chr6 (41-81)||(12102321-12102361)
[»] chr2 (1 HSPs)
chr2 (22-83)||(32785774-32785835)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 52082617 - 52082846
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatttccaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52082617 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatgtccaa 52082716  T
Q  122 gtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaaaaaga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082717 gtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaaaaaga 52082816  T
Q  222 gaagccaacattttgacgctttcattcttc 251  Q
    |||||||||||||||| |||||||||||||    
T  52082817 gaagccaacattttgatgctttcattcttc 52082846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 52092813 - 52093044
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatttccaa 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||  | |||    
T  52092813 catcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcaatgttgaccaagatctcaagttcaa 52092912  T
Q  122 gtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaata------tctcaggtcaagcacttgcaagtttgga 215  Q
     ||| ||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||      ||||||||||||| | |||| ||||||     
T  52092913 atgagtaattttacaacatcttaaaacttcaacaataccttcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttggg 52093012  T
Q  216 aaaagagaagccaacattttgacgctttcatt 247  Q
    |||||||||| ||||||||||| |||||||||    
T  52093013 aaaagagaaggcaacattttgatgctttcatt 52093044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 41889617 - 41889533
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 106  Q
    ||||||||| |||||| | ||| |||||||||||||||||||||| ||||| ||||||||||  |||||| |||| | |||||||    
T  41889617 catcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaaca 41889533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 32267511 - 32267572
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 83  Q
    ||||||||| | |||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  32267511 catcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 41901598 - 41901542
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagt 78  Q
    ||||||||| |||||| | |||||||||||||||||||| ||||| ||||| |||||    
T  41901598 catcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 18315336 - 18315275
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 83  Q
    ||||||||| |||||| | |||||||||||||||||||| ||||| ||||| ||||||||||    
T  18315336 catcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcatt 18315275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 27922544 - 27922605
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 83  Q
    |||||||||  ||||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  27922544 catcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 17636445 - 17636403
Alignment:
Q  41 tgacaagttcaacacctccaatttggaaacttgaaagttcatt 83  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  17636445 tgacaagttcaacacctccaatttgggaacttcaaagttcatt 17636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 28246339 - 28246273
Alignment:
Q  41 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaa 107  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| ||||||||    
T  28246339 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaa 28246273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 17628058 - 17628018
Alignment:
Q  41 tgacaagttcaacacctccaatttggaaacttgaaagttca 81  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  17628058 tgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 21235613 - 21235653
Alignment:
Q  41 tgacaagttcaacacctccaatttggaaacttgaaagttca 81  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  21235613 tgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 7307896 - 7307957
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 83  Q
    ||||||||| || ||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  7307896 catcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 8187153 - 8187093
Alignment:
Q  23 atcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 83  Q
    |||||||| | |||| | |||||||||||||||||||| |||||||| || ||||||||||    
T  8187153 atcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcatt 8187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 1754554 - 1754589
Alignment:
Q  29 aatttttgtctttgacaagttcaacacctccaattt 64  Q
    |||||||||||| |||||||||||||||||||||||    
T  1754554 aatttttgtcttcgacaagttcaacacctccaattt 1754589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 532225 - 532299
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattca 96  Q
    |||||||||| ||||| | |||||||||||||||||| |  ||||  |||| ||||||||||  |||||||||||    
T  532225 catcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattca 532299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 1754624 - 1754670
Alignment:
Q  127 taattttacaatatcttaaaacttcaacgataccgtcagatatgcaa 173  Q
    |||||||| || |||||||||||||||||||||| | ||||||||||    
T  1754624 taattttagaacatcttaaaacttcaacgatacctttagatatgcaa 1754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 33714918 - 33714861
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 79  Q
    ||||||||||| |||  ||||||||||||| |||||||| ||||||||||| ||||||    
T  33714918 catcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 51120936 - 51120895
Alignment:
Q  42 gacaagttcaacacctccaatttggaaacttgaaagttcatt 83  Q
    ||||||||||||||||||||||||  ||||| ||||||||||    
T  51120936 gacaagttcaacacctccaatttgagaacttcaaagttcatt 51120895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 6423265 - 6423315
Alignment:
Q  34 ttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 84  Q
    |||| ||||||||||||||||||||||  |||| ||||| |||||||||||    
T  6423265 ttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattg 6423315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 11936319 - 11936254
Alignment:
Q  41 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 106  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| |||||||    
T  11936319 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaaca 11936254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 11948299 - 11948234
Alignment:
Q  41 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 106  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| |||||||    
T  11948299 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaaca 11948234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 12102321 - 12102361
Alignment:
Q  41 tgacaagttcaacacctccaatttggaaacttgaaagttca 81  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  12102321 tgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 32785835 - 32785774
Alignment:
Q  22 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 83  Q
    ||||||||||| |||| | |||||||||||||||||| | ||||| | ||| ||||||||||    
T  32785835 catcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcatt 32785774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3657 times since January 2019
Visitors: 6174