View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_6 (Length: 493)
Name: NF0834_low_6
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 30136199 - 30135838
Alignment:
| Q |
1 |
tcatcatcaccatcaccatcatcttcatcaaactttagctttgactcaacattttgcagctcaaaaactgttgctgcagggtgtttcacaaccatttttc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30136199 |
tcatcatcatcatcaccatcatcttcatcaaactttagctttgactcaacattttgcagctcaaaaactgttgctgcagggtgtttcacaaccatttttc |
30136100 |
T |
|
| Q |
101 |
ataggattagagagtttcattcaaagttcattgtaagtgaaaaagttcaaaaatttaagactaacactcctactactacaagaactataatttcttcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30136099 |
ataggattagagagtttcattcaaagttcattgtaagtgaaaaagttcaaaaatttaagactaacactcctactactacaagaactataatttcttcttc |
30136000 |
T |
|
| Q |
201 |
ttc---ttctggtgtagttgcaaggttaatgggattggattcaatggaagaagagaaagtttctgaatcaaaaccaagttcacttacacattgcaagtca |
297 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30135999 |
ttcttcttctggtgtagttgcaaggttaatgggatt-gattcaatggaagaagataaagtttctgaatcaaaaccaagttcacctacacattgcaagtca |
30135901 |
T |
|
| Q |
298 |
ttgaactatgtaccacaagcttttcatttgcttgaaaatgagaactttttggtgtttagcttt |
360 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30135900 |
ttgaactatgtgccacaagcttttcatttgcttgaaaatgagaactttttggtgtttagcttt |
30135838 |
T |
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