View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_66 (Length: 217)
Name: NF0834_low_66
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 14573224 - 14573022
Alignment:
| Q |
1 |
cacaaagacactgcttgattttgaaccaccacatgatttttcacccacatgctttgaataaaagacttcaccctcttccttgtaatactaatgcatgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14573224 |
cacaaagacactgcttgattttgaaccaccacatgatttttcacccacatgctttgaataaaagacttcaccctcttccttgtaatactaatgcatgtgg |
14573125 |
T |
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| Q |
101 |
aatttttcaattcaccaaagagatcataaccaagttttcttccttcttcatcttcacaattagtcatcaaaagcatagaataaacatatttcgcatgatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
14573124 |
aatttttcaattcaccaaagagatcataaccaagttttcttccttcttcgtcttcacaattagccatcaaaagcatagaataaacatatttcgcatcatg |
14573025 |
T |
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| Q |
201 |
atg |
203 |
Q |
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||| |
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| T |
14573024 |
atg |
14573022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 49666482 - 49666286
Alignment:
| Q |
1 |
cacaaagacactgcttgattttgaaccaccacatgatttttcacccacatgctttgaataaaagacttcaccctcttccttgta------atactaatgc |
94 |
Q |
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| T |
49666482 |
cacaaagagagtccttgattttgagccaccacaacattcttcacccacatgctttgaataaaagacttcaccctctttctacaacccacaatagtaatgc |
49666383 |
T |
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| Q |
95 |
atgttgaatttttcaattcaccaaagagatcataaccaagttttcttccttcttcatcttcacaattagtcatcaaaagcatagaataaacatattt |
191 |
Q |
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| T |
49666382 |
ctgtggaattcttcaactcaccaaagagatcaaacccaagttttcttccttcttcatcatcacaattagccatcaaaagcatagaataaacatattt |
49666286 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 50936027 - 50936102
Alignment:
| Q |
116 |
caaagagatcataaccaagttttcttccttcttcatcttcacaattagtcatcaaaagcatagaataaacatattt |
191 |
Q |
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| T |
50936027 |
caaagagatcaaacccaagttttcttccttcatcatcatcacaattagccatcaaaagcatagaataaacatattt |
50936102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50911673 - 50911737
Alignment:
| Q |
1 |
cacaaagacactgcttgattttgaaccaccacatgatttttcacccacatgctttgaataaaaga |
65 |
Q |
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|||||||||| | |||||||| || ||||||| ||| |||||||||||||||||||||||||| |
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| T |
50911673 |
cacaaagacaatccttgatttggagacaccacaacattcttcacccacatgctttgaataaaaga |
50911737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 31001155 - 31001337
Alignment:
| Q |
1 |
cacaaagacactgcttgattttgaaccaccacatgatttttcacccacatgctttgaataaaagacttcaccctcttccttgtaatactaatgcatgttg |
100 |
Q |
| |
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|||||||||| | ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| || | ||||||| ||| |
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| T |
31001155 |
cacaaagacaattcttgattttgaacaaccacatgatttttcactcacatgctttgaataaaagacttc-------gccttacaaga-taatgcacgttt |
31001246 |
T |
|
| Q |
101 |
aatttttcaattcaccaaagagatcataaccaagttttcttccttcttcatcttcacaattagtcatcaaaagcatagaataaacatattt |
191 |
Q |
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||||||||||| | ||||||||||| | || | |||| |||||||| | || | | |||||| ||||||||||||||||||||||||||| |
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| T |
31001247 |
tatttttcaatttatcaaagagatcaaagcccaattttattccttctccgtcgttagaattagccatcaaaagcatagaataaacatattt |
31001337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 34305099 - 34304903
Alignment:
| Q |
1 |
cacaaagacactgcttgattttgaaccaccacatgatttttcacccacatgctttgaataaaagacttcaccctcttccttgtaat------actaatgc |
94 |
Q |
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|||||||||| | ||||||||||||||||||| |||| ||| ||||||||||| |||||| |||| ||| |||||||| | | |||||||| |
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| T |
34305099 |
cacaaagacaattcttgattttgaaccaccaccgaatttctcaaccacatgcttttaataaatgactgcactctcttcctgcaactcacaagactaatgc |
34305000 |
T |
|
| Q |
95 |
atgttgaatttttcaattcaccaaagagatcataaccaagttttcttccttcttcatcttcacaattagtcatcaaaagcatagaataaacatattt |
191 |
Q |
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| | ||||||||||| |||||||||||||||| | || | ||||||| ||||| ||| |||| ||||| |||||||||||||||||| |||||||| |
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| T |
34304999 |
acgatgaatttttcagttcaccaaagagatcaaaccctaattttctttcttctccattttcagcattagccatcaaaagcatagaatatacatattt |
34304903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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