View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0834_low_7 (Length: 489)
Name: NF0834_low_7
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Original strand, 33802864 - 33803303
Alignment:
| Q |
30 |
aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctactt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33802864 |
aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggcgatctactt |
33802963 |
T |
|
| Q |
130 |
ctcttgaatgatgaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802964 |
ctcttgaatgatgaattagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac |
33803063 |
T |
|
| Q |
230 |
tactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaatagtcggatataaggaggatagtga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33803064 |
tactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaatagtcggatataaggaggataatga |
33803163 |
T |
|
| Q |
330 |
aatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgttgttg------------------gtagtagtagga |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
33803164 |
catattatctctagccgagatggacgacacacttctcggtcctccattgataaattgagaagtgttgttgccttctaaagcattgtgagtagtagtagga |
33803263 |
T |
|
| Q |
412 |
atgatgctaatatttgacccaaaaagtcttaaatatattg |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33803264 |
atgatgctaatatttgacccaaaaagtcttaaatatattg |
33803303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Original strand, 33731485 - 33731924
Alignment:
| Q |
30 |
aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctactt |
129 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
33731485 |
aaaaggaggaggaagagtgtgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcccctctagtgaatggatcaggcgatctactt |
33731584 |
T |
|
| Q |
130 |
ctcttgaatgatgaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33731585 |
ctcttgaatgatgaattagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacagaattagcattac |
33731684 |
T |
|
| Q |
230 |
tactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaatagtcggatataaggaggatagtga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
33731685 |
tactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaatagtcagatataaggaggataatga |
33731784 |
T |
|
| Q |
330 |
aatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgttgttg------------------gtagtagtagga |
411 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
33731785 |
catattatctctagtcgagatggacgacacacttctcgatcctccattgataaattgagaagtgctgttgccttctaaaacattgtgagtagtagtagga |
33731884 |
T |
|
| Q |
412 |
atgatgctaatatttgacccaaaaagtcttaaatatattg |
451 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33731885 |
acgatgctaatatttgacccaaaaagtctaaaatatattg |
33731924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 6145650 - 6145414
Alignment:
| Q |
30 |
aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctactt |
129 |
Q |
| |
|
|||||||||||||| |||| |||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6145650 |
aaaaggaggaggaaaagtgtgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctcctc |
6145551 |
T |
|
| Q |
130 |
ctcttgaatgatgaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac |
229 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||| || |||| |||||||||||||| || |||||||||||||||||| |||||| |||||| |
|
|
| T |
6145550 |
ctcttgaacaatgaattagcacgaaacaactcatcattcctagtaccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattac |
6145451 |
T |
|
| Q |
230 |
tactatttcctacaacatctccacttctttgataatc |
266 |
Q |
| |
|
|| | |||||| ||||| ||||||||||| ||||||| |
|
|
| T |
6145450 |
tattgtttcctgcaacaactccacttcttggataatc |
6145414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 6126231 - 6125996
Alignment:
| Q |
30 |
aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctactt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
|
|
| T |
6126231 |
aaaaggaggaggaagagtgcgtcttctgattgagcttctgtcaacttgtgaaccttgattagaagtttcacctctaatgaatggatcgggtgatctattt |
6126132 |
T |
|
| Q |
130 |
ctcttgaatgatgaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac |
229 |
Q |
| |
|
||||| || |||||||||| || ||||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
6126131 |
ctctttaacaatgaattagcacgaaacaactcatcattcctagtaccaatagtaatggtgttaatttcatcgttgaatgacgaaatggaattcacattac |
6126032 |
T |
|
| Q |
230 |
tactatttcctacaacatctccacttctttgataat |
265 |
Q |
| |
|
|| |||||||| ||||| | ||||||||||||||| |
|
|
| T |
6126031 |
tattatttcctccaacaaatgcacttctttgataat |
6125996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 70 - 282
Target Start/End: Complemental strand, 6152030 - 6151818
Alignment:
| Q |
70 |
tcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctacttctcttgaatgatgaattagcctgacacaactcatcattcc |
169 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |||| |||| || ||||||||||||| | |
|
|
| T |
6152030 |
tcaacttgtaaaccttgattagaagtttcacctctagttaatggatcatgtgatctacttctctttaaccgtgaactagcacgaaacaactcatcatttc |
6151931 |
T |
|
| Q |
170 |
cagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatcgga |
269 |
Q |
| |
|
|| |||||||| ||||| ||||||| ||||| ||||||| |||| |||||| |||||||||| |||||| ||||| |||||||||||||| |||| || |
|
|
| T |
6151930 |
tagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatcaga |
6151831 |
T |
|
| Q |
270 |
ttctacaacaggt |
282 |
Q |
| |
|
| || |||||||| |
|
|
| T |
6151830 |
tcctgcaacaggt |
6151818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 312 - 476
Target Start/End: Complemental strand, 28755565 - 28755383
Alignment:
| Q |
312 |
atataaggaggatagtgaaatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgttgttg------------ |
399 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
28755565 |
atataaggaggagaatgacatattatctctagccgagatggacgacacacttctcgatcctcctttgataaagtgagaagtgttgttgccttctaaagca |
28755466 |
T |
|
| Q |
400 |
------gtagtagtaggaatgatgctaatatttgacccaaaaagtcttaaatatattgcatcactatatgggctcctttcttc |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
28755465 |
ttgtaactagtagtaggaatgatgctaatatttgacccaaaaagtattaaatatattgcatcatgatatgagatcctttcttc |
28755383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 295 - 476
Target Start/End: Original strand, 28755573 - 28755770
Alignment:
| Q |
295 |
tgtcctccaatagtcggatataaggaggatagtgaaatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgt |
394 |
Q |
| |
|
|||||||||||| | ||||||||| || | ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
28755573 |
tgtcctccaatatcagaatataaggaagagaatgacatattatctctagccgagatggacgacacgcttctcgatcctccattgacaaagtgagaagtgt |
28755672 |
T |
|
| Q |
395 |
tgttg------------------gtagtagtaggaatgatgctaatatttgacccaaaaagtcttaaatatattgcatcactatatgggctcctttcttc |
476 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
28755673 |
tgttgccttctaaaacattctaagtagtagtaggaatgttgctaatatttgacccaaaaa--cttaaatatattgcatcacaatataggctcctttcttc |
28755770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 6138589 - 6138494
Alignment:
| Q |
39 |
aggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctacttctctt |
134 |
Q |
| |
|
|||||||||||||||||| ||| | | ||||||| |||||||||||| |||||||||||||||| | |||| || |||||||| |||||||| |
|
|
| T |
6138589 |
aggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctt |
6138494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 6151745 - 6151703
Alignment:
| Q |
415 |
atgctaatatttgacccaaaaagtcttaaatatattgcatcac |
457 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
6151745 |
atgctaatatttgtcccaaaaagtcttagatatactgcatcac |
6151703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 32621632 - 32621665
Alignment:
| Q |
290 |
caatttgtcctccaatagtcggatataaggagga |
323 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
32621632 |
caatttgtcctccaatagttggatataaggagga |
32621665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 6138412 - 6138376
Alignment:
| Q |
204 |
gaatgacgaaacggaattagcattactactatttcct |
240 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
6138412 |
gaatgatgaaatggaattagcattactactatttcct |
6138376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2066 times since January 2019
Visitors: 6156