View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_77 (Length: 207)
Name: NF0834_low_77
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_77 |
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| [»] scaffold1113 (2 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 32684055 - 32684230
Alignment:
| Q |
27 |
gaacctgtgataacatgaatgaatcagagataggggaatttgacataaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgt |
126 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684055 |
gaacctgtgataacatgaatgaatcagagatagggaaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgt |
32684154 |
T |
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| Q |
127 |
agacgcatgaatgagccggatgctgatttagcgttcaaggcaagtttttctctaacaataattttgattctaagtt |
202 |
Q |
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| T |
32684155 |
agacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattctaagtt |
32684230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 32692090 - 32692128
Alignment:
| Q |
164 |
aggcaagtttttctctaacaataattttgattctaagtt |
202 |
Q |
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| T |
32692090 |
aggcaagtttttctctaacaataattttgattctaagtt |
32692128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 134 - 57
Alignment:
| Q |
125 |
gtagacgcatgaatgagccggatgctgatttagcgttcaaggcaagtttttctctaacaataattttgattctaagtt |
202 |
Q |
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| T |
134 |
gtagacgcgtgaatgagccggatgctgatttagcattcgaggcaagtttttctctaacaataattttgattctaagtt |
57 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 1904 - 1872
Alignment:
| Q |
164 |
aggcaagtttttctctaacaataattttgattc |
196 |
Q |
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| T |
1904 |
aggcaagtttttctctaacaatgattttgattc |
1872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 1713 - 1745
Alignment:
| Q |
164 |
aggcaagtttttctctaacaataattttgattc |
196 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
1713 |
aggcaagtttttctctaacaatgattttgattc |
1745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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