View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_8 (Length: 489)
Name: NF0834_low_8
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 29 - 478
Target Start/End: Complemental strand, 46487140 - 46486685
Alignment:
| Q |
29 |
acactcttcaacaaaaaa-gataccgtataatatagatagattactagtgtattaaaaaagagcttacaaatgcttttatcacgtaattaaggtggatga |
127 |
Q |
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| T |
46487140 |
acactcttcaacaaaaaaagataccgtataatatagatagattactagtgtaataaaaaagagcttacaaatgcttttatcacgtaattaaggtggatga |
46487041 |
T |
|
| Q |
128 |
gcattgtat----ctcagtaatcacaagccaaatatggacacgtgaccagcgtatctt-ctatattagttatcatgtgaatgcgatgagcacattgaatt |
222 |
Q |
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| T |
46487040 |
gcattgtatgtatctcagtaatcacaagccaaatatggacacgtgaccagcgtatctttctatagtagttatcatgtgaatgtgatgagcacattgaatt |
46486941 |
T |
|
| Q |
223 |
tgaaagagaagaactagaatacatgtgcattgcatgggtgatttagagaaattagtggaggatggaatagaatttacgttggtcggcctcaattaaaaag |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46486940 |
tgaaagagaagaactagaatacatgtgcattgcatgggtgatatagagaaattagtggaggatggaatagaatttacgttggtcggcctcaattaaaaag |
46486841 |
T |
|
| Q |
323 |
atgaacttgtaaagaaaaaagccacactaattcaagtgtgttgctcaagactcgaattttgaacattatacgttcaaataattcttgacttaccattatt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46486840 |
atgaacttgtaaagaaaaaagccacactaattcaagtgtgttgctcaagactcgaattttgaacattatacgttcaaataattcttgacttaccattatt |
46486741 |
T |
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| Q |
423 |
gtatagtttttgtcaccatgaaataaactacctacatcaaacatcattgtccctat |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46486740 |
gtatagtttttgtcaccatgaaataaactacctacatcaaacatcattgtccctat |
46486685 |
T |
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