View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0834_low_81 (Length: 203)
Name: NF0834_low_81
Description: NF0834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0834_low_81 |
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| [»] scaffold1113 (2 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 32684077 - 32684230
Alignment:
| Q |
31 |
atcagagataggggaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatg |
130 |
Q |
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| T |
32684077 |
atcagagatagggaaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatg |
32684176 |
T |
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| Q |
131 |
ctgatttagcattcaaggcaagtttttctctaacaataattttgattctaagtt |
184 |
Q |
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| T |
32684177 |
ctgatttagcattcaaggcaagtttttctctaacaataattttgattctaagtt |
32684230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 32692090 - 32692128
Alignment:
| Q |
146 |
aggcaagtttttctctaacaataattttgattctaagtt |
184 |
Q |
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| T |
32692090 |
aggcaagtttttctctaacaataattttgattctaagtt |
32692128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 134 - 57
Alignment:
| Q |
107 |
gtagacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattctaagtt |
184 |
Q |
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| T |
134 |
gtagacgcgtgaatgagccggatgctgatttagcattcgaggcaagtttttctctaacaataattttgattctaagtt |
57 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 1904 - 1872
Alignment:
| Q |
146 |
aggcaagtttttctctaacaataattttgattc |
178 |
Q |
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| T |
1904 |
aggcaagtttttctctaacaatgattttgattc |
1872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 37505266 - 37505205
Alignment:
| Q |
28 |
agtatcagagataggggaatttgacatgaa-ggtgtgtggatatcattgtaagaatctcaaa |
88 |
Q |
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|||||||||||| | ||||||||| ||||| |||||||||| ||||||| |||||| ||||| |
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| T |
37505266 |
agtatcagagattgtggaatttgatatgaaaggtgtgtggacatcattggaagaatgtcaaa |
37505205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 1713 - 1745
Alignment:
| Q |
146 |
aggcaagtttttctctaacaataattttgattc |
178 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
1713 |
aggcaagtttttctctaacaatgattttgattc |
1745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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