View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0835_high_2 (Length: 449)
Name: NF0835_high_2
Description: NF0835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0835_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 136 - 421
Target Start/End: Original strand, 39380051 - 39380331
Alignment:
| Q |
136 |
atatgcttgtagtatttcatttaagcatagtattttatttagactcgcacatact-atacacgcacaccctactcacggtagaaaagaaaatgaaaatac |
234 |
Q |
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| T |
39380051 |
atatgcttgtagtatttcatttaagcatagtatttcatttagactcgcacacacttatacacgcacaccctacttacagtagaaaagaaaatgaaaatac |
39380150 |
T |
|
| Q |
235 |
aacatacctctaaatagagatgttagaaaaattggtttacaaagggggagaacaagcaacggttaagcaatcacttacacacatatttttctccaaattt |
334 |
Q |
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|||||||||||||| |||||||| ||||||| | |||||| | | |||||||||||| ||||||||||||||||| |||||||||||| ||||||| |
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| T |
39380151 |
aacatacctctaaacagagatgtcagaaaaactagtttacgacgagggagaacaagcgacggttaagcaatcact----cacatatttttc--caaattt |
39380244 |
T |
|
| Q |
335 |
gatattctatcttaaagcttatacatatgcttaagattagcttatgattattgtatcataaatatttttaatggaatgaacaacgtc |
421 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39380245 |
gatattctatcttagagcttatacatatgcttaagattagcttatgattattgtatcataaatatttttaatggaatgaacaacgtc |
39380331 |
T |
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