View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0835_high_3 (Length: 432)
Name: NF0835_high_3
Description: NF0835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0835_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 7304902 - 7305277
Alignment:
| Q |
9 |
agcataggagtactactgatatggtaggctaagacttcatcgaacaacaagctaatattctccatataccaattttttatgttggggatgaacatatcaa |
108 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
7304902 |
agcaaaggagtactgctgatatggtaggctaagacttcatcgaacaacaagctaatattctccatataccaattttttgtgttggggatgaacgtatcaa |
7305001 |
T |
|
| Q |
109 |
ctacacggagattgtccatagctgatttcattatcgtaggtggtggcatgacatactcatttcgaatccagttaggatcccaaataagatgctagtgcgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7305002 |
ctacacggagattgtccatagctgatttcattatcgtaggtggtgggatgacatactcatttcgaatccagttaggatcccaactaagatgctagtgcgt |
7305101 |
T |
|
| Q |
209 |
gaagtaccgatgctccacttgaaaccatttttaatgacaactttaacaccaaatgcttctccaaacatagcttggagaggcnnnnnnnntcactagctag |
308 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7305102 |
ga---accaatgctccacttgaaaccatttttaatgacaactttaacaccaaatgcttctccaaacatagcttggagaggcaaaaaaaatcactagctag |
7305198 |
T |
|
| Q |
309 |
aaaatatctagctttgagtagtctagtgatcagagagtctgggttattgagcaacatccaagccagtttgcccatcatt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7305199 |
aaaatatctagctttgagtagtctagtgatcagagagtctgggttattgagcaacatccacgccagtttgcccatcatt |
7305277 |
T |
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