View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0835_high_5 (Length: 396)
Name: NF0835_high_5
Description: NF0835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0835_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 44285942 - 44285583
Alignment:
| Q |
30 |
aaacccattggtaagctcagtgataacttgcgttgatggnnnnnnnnnnnntttgttagctcgaagaataactttgggtattacagggaggacaatattg |
129 |
Q |
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| T |
44285942 |
aaacccattggtaagctcagtgataacttgcgttgatggatatatatatattttgttagctcgaagaataactttgggtattacagggaggacaatattg |
44285843 |
T |
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| Q |
130 |
atgctaannnnnnnnnnnnn-gagagagaatattgatgctaattgatacacataaaaagcaattacataagtgaaattcacacgacatcttcatataaga |
228 |
Q |
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| T |
44285842 |
atgctaattttttttttttttgagagagaatattgatgctaattgatacacataaaaagcaattacataagtgaaattcacacgacatcttcatataaga |
44285743 |
T |
|
| Q |
229 |
ccttaacgtttgaaatatatgcactctctaacagcgacggagccaggaattttgcagtgtctgggcaaaaaattttgccaaattaatattttcaaaatat |
328 |
Q |
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| T |
44285742 |
ccttaacgtttgaaatatatgcactctctaacagcgacggagccaggaattttgcagtgtctgggcaaaaaattttgccaaattaatattttcaaaatat |
44285643 |
T |
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| Q |
329 |
atattaaacgattttaagatatgacaaaattgtggactggtgcagtggtttatattgttg |
388 |
Q |
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| T |
44285642 |
atattaaacgattttaagatatgacaaaattgtggactggtgcagtggtttattttgttg |
44285583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 34501476 - 34501389
Alignment:
| Q |
289 |
ctgggcaaaaaattttgccaaattaatattttcaaaatatatattaaacgattttaagata-tgacaaaattgtggactggtgcagtggttt |
379 |
Q |
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| T |
34501476 |
ctgggcaaaatattttgccaaat----attttcagaatatatattaaacagttttaagatactaacaaaattgtgggctagtgcggtggttt |
34501389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 47924577 - 47924512
Alignment:
| Q |
313 |
aatattttcaaaatatatattaaacgattttaagat-atgacaaaattgtggactggtgcagtggt |
377 |
Q |
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|||||||||| |||||||||||||| ||||||| || || |||||||||| | |||||||||||| |
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| T |
47924577 |
aatattttcagaatatatattaaacaattttaaaataatagcaaaattgtgaattggtgcagtggt |
47924512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 30249185 - 30249149
Alignment:
| Q |
267 |
ggagccaggaattttgcagtgtctgggcaaaaaattt |
303 |
Q |
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| T |
30249185 |
ggagccaggaattttacagagtctgggcaaaaaattt |
30249149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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