View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0835_high_6 (Length: 266)
Name: NF0835_high_6
Description: NF0835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0835_high_6 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 12813366 - 12813141
Alignment:
| Q |
10 |
gtaaacttcctttaatcatttttgttaaacaaaatatgtggcacaaaaactagacttgttacttgtatactttttaattttgtataaaaaatgacttgta |
109 |
Q |
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| T |
12813366 |
gtaaacttcctttaatcatttttgtta--caaaatacgtggcacaaaaactagacttgttacatgtatactttttaattttgtataaaaaatgacttgta |
12813269 |
T |
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| Q |
110 |
ttgttatttaaactttaattaaacaattattacatctactgtaaattcttctctttggtgctctaaccctttgtgttgtcttcaaagtggttaacactac |
209 |
Q |
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| T |
12813268 |
ttgttatttaaactttaattaaacaattattacatctactgtaaattcttctctttggtactctaaccctttgtgttgtcttcaaagtggttaacactag |
12813169 |
T |
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| Q |
210 |
tttgtaatgagattgagtaccccttaat |
237 |
Q |
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| T |
12813168 |
tttgtaatgagattgagtaccccttaat |
12813141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 95329 - 95251
Alignment:
| Q |
153 |
aattcttctctttggtgctctaaccctttgtgttgtcttcaaagtggttaacactactttgtaatgagattgagtaccc |
231 |
Q |
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| T |
95329 |
aatttttctatttggtgttctaatcctttgacttgtcttcaaagtggttattattactttgtaatgggattgagtaccc |
95251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 19144447 - 19144525
Alignment:
| Q |
153 |
aattcttctctttggtgctctaaccctttgtgttgtcttcaaagtggttaacactactttgtaatgagattgagtaccc |
231 |
Q |
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| T |
19144447 |
aatttttctgtttggtgttctaatactttgacttgtcttcaaagtggttatcattactttgtaatgggattgagtaccc |
19144525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 19095041 - 19095109
Alignment:
| Q |
163 |
tttggtgctctaaccctttgtgttgtcttcaaagtggttaacactactttgtaatgagattgagtaccc |
231 |
Q |
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| T |
19095041 |
tttggtgttctaatactttgacttgtcttcaaagtggttatcattactttgtaatgggattgagtaccc |
19095109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 10406598 - 10406646
Alignment:
| Q |
160 |
ctctttggtgctctaaccctttgtgttgtcttcaaagtggttaacacta |
208 |
Q |
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| T |
10406598 |
ctctttagtgttctaactctttgttttgtcttcaaagtggttgacacta |
10406646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 29761712 - 29761644
Alignment:
| Q |
167 |
gtgctctaaccctttgtgttgtcttcaaagtggttaacactactttgtaatgagattgagtacccctta |
235 |
Q |
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| T |
29761712 |
gtgctctaaccctctgtcttgtcttcaaagtggctaacaatattttacaatgagattgaatacccctta |
29761644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 21056 - 20991
Alignment:
| Q |
163 |
tttggtgctctaaccctttgtgttgtcttcaaagtggttaacactactttgtaatgagattgagtaccc |
231 |
Q |
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| T |
21056 |
tttggtgttctaatcctttgacttgtcttcaaagtggtt---attactttgtaatgggattgagtaccc |
20991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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