View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0835_high_7 (Length: 260)
Name: NF0835_high_7
Description: NF0835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0835_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 14499947 - 14499861
Alignment:
| Q |
146 |
gagctattacgaccatcaagagataattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaatatt |
232 |
Q |
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| T |
14499947 |
gagctattacgaccatcaagagataattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaatatt |
14499861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 14500076 - 14499994
Alignment:
| Q |
17 |
ataatactccatattcaaaattatcacaacacgtataattgcttacaataatcagggtgtgtgtcttgtctatcatgaaaggg |
99 |
Q |
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| T |
14500076 |
ataatactccatattcaaaattatcacaacacgtataattgcttacaataatcagggtgcgtgtcttgtctatcatgaaaggg |
14499994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 14350590 - 14350532
Alignment:
| Q |
170 |
aattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaa |
228 |
Q |
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| T |
14350590 |
aattaataaaaattatatttggaagaatgaggttgttcacactataaagtgatcatgaa |
14350532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 15040146 - 15040218
Alignment:
| Q |
154 |
acgaccatcaagagataattaataataattataattggaagattgaagtttttcacactataaagtgatcatg |
226 |
Q |
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| T |
15040146 |
acgaccatcaaaagacaattaataataattataatttaaagaatgaggctttttccactataaagtgatcatg |
15040218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 14425578 - 14425522
Alignment:
| Q |
170 |
aattaataataattataattggaagattgaagtttttcacactataaagtgatcatg |
226 |
Q |
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| T |
14425578 |
aattaataataattatatttggaagaatgaggttgttcatgctataaagtgatcatg |
14425522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 15040002 - 15040079
Alignment:
| Q |
20 |
atactccatattcaaaattatcacaacacgtataattgcttacaataatcagggtgtgtgtcttgtctatcatgaaag |
97 |
Q |
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| T |
15040002 |
atactcaatatttaaaattatcacaacacatataattgattgtaataattgaggtttatatcttgtctatcatgaaag |
15040079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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