View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0835_low_1 (Length: 490)

Name: NF0835_low_1
Description: NF0835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0835_low_1
NF0835_low_1
[»] chr8 (12 HSPs)
chr8 (29-476)||(5740109-5740555)
chr8 (304-351)||(28908977-28909025)
chr8 (315-351)||(34694586-34694622)
chr8 (303-351)||(2639410-2639458)
chr8 (303-351)||(3734622-3734670)
chr8 (303-351)||(4718799-4718847)
chr8 (303-351)||(8765525-8765573)
chr8 (303-351)||(20306062-20306110)
chr8 (303-351)||(21092695-21092743)
chr8 (303-351)||(33534566-33534614)
chr8 (303-351)||(34237654-34237702)
chr8 (305-349)||(36094840-36094884)
[»] chr7 (18 HSPs)
chr7 (303-352)||(21574101-21574150)
chr7 (303-351)||(2344453-2344501)
chr7 (304-352)||(577835-577883)
chr7 (303-351)||(654704-654752)
chr7 (303-351)||(7175861-7175909)
chr7 (303-351)||(17279685-17279733)
chr7 (303-351)||(27312306-27312354)
chr7 (312-351)||(674444-674483)
chr7 (304-351)||(22696475-22696522)
chr7 (303-354)||(23330738-23330789)
chr7 (304-350)||(18044262-18044308)
chr7 (305-351)||(32849745-32849791)
chr7 (303-352)||(28089972-28090021)
chr7 (303-351)||(2751425-2751473)
chr7 (303-351)||(16374148-16374196)
chr7 (303-351)||(22120042-22120090)
chr7 (315-351)||(31197744-31197780)
chr7 (303-351)||(40542909-40542957)
[»] chr5 (15 HSPs)
chr5 (303-351)||(4603927-4603975)
chr5 (303-351)||(32059439-32059487)
chr5 (315-352)||(24158177-24158214)
chr5 (315-351)||(930497-930533)
chr5 (304-352)||(10837445-10837493)
chr5 (305-351)||(22648172-22648218)
chr5 (303-351)||(8484660-8484708)
chr5 (303-351)||(10631288-10631336)
chr5 (315-351)||(10869576-10869612)
chr5 (303-351)||(18207357-18207405)
chr5 (303-351)||(19456210-19456258)
chr5 (304-352)||(25750613-25750661)
chr5 (303-351)||(27498730-27498778)
chr5 (303-351)||(37495204-37495252)
chr5 (303-351)||(41351103-41351151)
[»] chr3 (19 HSPs)
chr3 (303-351)||(48977538-48977586)
chr3 (304-351)||(50731237-50731284)
chr3 (304-351)||(50781570-50781617)
chr3 (303-351)||(15566499-15566547)
chr3 (305-351)||(25379911-25379957)
chr3 (310-351)||(4252402-4252443)
chr3 (303-351)||(3747731-3747779)
chr3 (303-351)||(8097278-8097326)
chr3 (303-351)||(10083818-10083866)
chr3 (303-351)||(10190741-10190789)
chr3 (304-352)||(23890688-23890736)
chr3 (315-351)||(26158961-26158997)
chr3 (303-351)||(26174263-26174311)
chr3 (315-343)||(30695257-30695285)
chr3 (303-351)||(30908503-30908551)
chr3 (303-351)||(32094756-32094804)
chr3 (303-351)||(53424176-53424224)
chr3 (303-351)||(53848433-53848481)
chr3 (315-351)||(55371305-55371341)
[»] chr2 (7 HSPs)
chr2 (303-351)||(14486975-14487023)
chr2 (303-351)||(8192351-8192399)
chr2 (303-351)||(15038109-15038157)
chr2 (303-351)||(28194137-28194185)
chr2 (304-352)||(41329991-41330039)
chr2 (304-352)||(31778180-31778228)
chr2 (303-351)||(44946052-44946100)
[»] scaffold0160 (1 HSPs)
scaffold0160 (304-351)||(29143-29190)
[»] scaffold0049 (1 HSPs)
scaffold0049 (304-351)||(66904-66951)
[»] chr4 (10 HSPs)
chr4 (304-351)||(39343610-39343657)
chr4 (303-351)||(54127341-54127389)
chr4 (305-351)||(12710327-12710373)
chr4 (315-345)||(41621593-41621623)
chr4 (303-352)||(27528794-27528843)
chr4 (315-351)||(20566500-20566536)
chr4 (315-351)||(22488039-22488075)
chr4 (303-351)||(34844757-34844805)
chr4 (303-351)||(40058851-40058899)
chr4 (304-352)||(49288006-49288054)
[»] chr1 (8 HSPs)
chr1 (304-351)||(52135276-52135323)
chr1 (305-351)||(37351454-37351500)
chr1 (304-347)||(1486574-1486617)
chr1 (317-352)||(16899652-16899687)
chr1 (303-351)||(4621236-4621284)
chr1 (315-351)||(27159235-27159271)
chr1 (315-351)||(30677326-30677362)
chr1 (315-351)||(46607960-46607996)
[»] chr6 (5 HSPs)
chr6 (315-352)||(8479446-8479483)
chr6 (303-351)||(3222635-3222683)
chr6 (303-351)||(15360097-15360145)
chr6 (303-351)||(34147496-34147544)
chr6 (303-351)||(34160112-34160160)
[»] scaffold0576 (1 HSPs)
scaffold0576 (303-351)||(5081-5129)
[»] scaffold0026 (1 HSPs)
scaffold0026 (319-351)||(5981-6013)


Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 29 - 476
Target Start/End: Original strand, 5740109 - 5740555
Alignment:
Q  29 aattggttgagtcagggtcgaaatgtgataattgagaaaagcaacaggaaccctagggtcacaaaggatggtgtgactgtagccaaaagtatcaaattca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5740109 aattggttgagtcagggtcgaaatgtgataattgagaaaagcaacaggaaccctagggtcacaaaggatggtgtgactgtagccaaaagtatcaaattca 5740208  T
Q  129 aagataaagccaaaaatcttggtgctgatctcatcaagcaagtggctaaggctaccaacagtactgctggagacggtgattacttttctttcaactttta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5740209 aagataaagccaaaaatcttggtgctgatctcatcaagcaagtggctaaggctaccaacagtactgctggagacggtgattacttttctttcaactttta 5740308  T
Q  229 tttaacctcaaaacatcctataagtgtttattgagaattggattcttattgataatannnnnnnnnnnnnnnnngaaaactcagtgtccgatccaaggac 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||| |||||||||||||||||    
T  5740309 tttaacctcaaaacatcctataagtgtttattgagaattggattcttattgataat-ttttttttttcttttttgaaaactcggtgtccgatccaaggac 5740407  T
Q  329 cgactaatctgaggggaccaatcttattgataatgttactttagcataagtcctacaagaagcttcttcgaagtagaaattaataatatatttcaatctc 428  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5740408 cgactaatccgaggggaccaatcttattgataatgttactttagcataagtcctacaagaagcttcttcgaagtagaaattaataatatatttcaatctc 5740507  T
Q  429 aaggaaaattaatacagacttgtccatcaaaactcattaactatgtcc 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5740508 aaggaaaattaatacagacttgtccatcaaaactcattaactatgtcc 5740555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 28909025 - 28908977
Alignment:
Q  304 aaaactcagtgtcc-gatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  28909025 aaaactcggtgtcccgatccaaggaccgactaatctgaggggatcaatc 28908977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 34694586 - 34694622
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34694586 tccgatccaaggacagactaatctgaggggaccaatc 34694622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 2639410 - 2639458
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  2639410 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 2639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 3734622 - 3734670
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  3734622 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 3734670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 4718847 - 4718799
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  4718847 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 4718799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 8765525 - 8765573
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  8765525 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 8765573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 20306110 - 20306062
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||||| ||||||||  |||||||||||||    
T  20306110 gaaaactcggtatccgatccaaggatcgactaattcgaggggaccaatc 20306062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 21092743 - 21092695
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||||| ||||||||  |||||||||||||    
T  21092743 gaaaactcggtatccgatccaaggatcgactaattcgaggggaccaatc 21092695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 33534566 - 33534614
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| ||  |||||||||||||||||||||| || ||||||||||    
T  33534566 gaaaactcggtaaccgatccaaggaccgactaatccgaagggaccaatc 33534614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 34237654 - 34237702
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  34237654 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 34237702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 36094884 - 36094840
Alignment:
Q  305 aaactcagtgtccgatccaaggaccgactaatctgaggggaccaa 349  Q
    ||||| ||| |||||||||| |||||||||||| |||||||||||    
T  36094884 aaactaagtatccgatccaaagaccgactaatccgaggggaccaa 36094840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 21574101 - 21574150
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||    
T  21574101 gaaaactcggtatccgatccaaggaccgactaatccgaggggaccaatct 21574150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 2344501 - 2344453
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||    
T  2344501 gaaaactcggtatccgatccaaggaccgactaatccgaggggaccaatc 2344453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 577883 - 577835
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    ||||| |||| ||||||| ||| ||||||||||||||||||||||||||    
T  577883 aaaacccagtatccgatcaaagaaccgactaatctgaggggaccaatct 577835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 654704 - 654752
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| ||||||||||| |||||||||||||    
T  654704 gaaaactcggtatccgatccaagaaccgactaatccgaggggaccaatc 654752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 7175861 - 7175909
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||||| ||||||||||| | ||||||||| |||||||||||||    
T  7175861 gaaaactcagtatccgatccaagaatcgactaatccgaggggaccaatc 7175909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 17279733 - 17279685
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || |||||||||| ||||||||||| ||||||||||||||    
T  17279733 gaaaactcggtatccgatccaaagaccgactaatttgaggggaccaatc 17279685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 27312354 - 27312306
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | |||||||||||||||||||||||    
T  27312354 gaaaactcggtatccgatccaagaatcgactaatctgaggggaccaatc 27312306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 674444 - 674483
Alignment:
Q  312 gtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  674444 gtgtccgatctaaggaccgactaatctgaggggatcaatc 674483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 22696522 - 22696475
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||| || ||||||||||||||||||||||| ||| |||||||||    
T  22696522 aaaactcggtatccgatccaaggaccgactaatccgagaggaccaatc 22696475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 23330738 - 23330789
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatctta 354  Q
    |||||||| || |||||||||||||  ||||||| |||||||||||||||||    
T  23330738 gaaaactcggtatccgatccaaggattgactaatttgaggggaccaatctta 23330789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 18044308 - 18044262
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaat 350  Q
    ||||||| || ||||||||||| | ||||||||||||||||||||||    
T  18044308 aaaactcggtatccgatccaagaatcgactaatctgaggggaccaat 18044262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 32849791 - 32849745
Alignment:
Q  305 aaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||| || ||||||||||| | |||||||||||||||||||||||    
T  32849791 aaactcggtatccgatccaagaatcgactaatctgaggggaccaatc 32849745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 28090021 - 28089972
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    |||||||| || ||||||||||| | ||||||||| ||||||||||||||    
T  28090021 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatct 28089972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 2751473 - 2751425
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  2751473 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 2751425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 16374196 - 16374148
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  16374196 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 16374148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 22120090 - 22120042
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  22120090 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 22120042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 31197780 - 31197744
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||||| | |||||||||||||||||||||||    
T  31197780 tccgatccaagaatcgactaatctgaggggaccaatc 31197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 40542909 - 40542957
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  40542909 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 40542957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 4603975 - 4603927
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||    
T  4603975 gaaaactcggtatccgatccaaggaccgactaatccgaggggaccaatc 4603927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 32059439 - 32059487
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||    
T  32059439 gaaaactcggtatccgatccaaggaccgactaatccgaggggaccaatc 32059487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 24158177 - 24158214
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    |||||| |||||||||||||||||||||||||||||||    
T  24158177 tccgattcaaggaccgactaatctgaggggaccaatct 24158214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 930497 - 930533
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||||||||||||||||| |||||||||||||    
T  930497 tccgatccaaggaccgactaatccgaggggaccaatc 930533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 10837493 - 10837445
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    ||||||| || ||||||| ||||||| ||||||||||||||||||||||    
T  10837493 aaaactcggtatccgatctaaggaccaactaatctgaggggaccaatct 10837445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 22648218 - 22648172
Alignment:
Q  305 aaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||| || |||||||||| |||||||||||||||||||| |||||    
T  22648218 aaactcggtatccgatccaaagaccgactaatctgaggggatcaatc 22648172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 8484660 - 8484708
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  8484660 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 8484708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 10631288 - 10631336
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  10631288 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 10631336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 10869576 - 10869612
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  10869576 tccgatccaagaaccgactaatccgaggggaccaatc 10869612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 18207405 - 18207357
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  18207405 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 18207357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 19456210 - 19456258
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  19456210 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 19456258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 25750613 - 25750661
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    ||||||| || ||||||||||| | |||||||||||| |||||||||||    
T  25750613 aaaactcggtatccgatccaagaatcgactaatctgaagggaccaatct 25750661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 27498730 - 27498778
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  27498730 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 27498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 37495252 - 37495204
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  37495252 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 37495204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 41351103 - 41351151
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  41351103 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 41351151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 48977586 - 48977538
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||    
T  48977586 gaaaactcggtatccgatccaaggaccgactaatccgaggggaccaatc 48977538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 50731237 - 50731284
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||    
T  50731237 aaaactcggtatccgatccaaggatcgactaatctgaggggaccaatc 50731284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 50781617 - 50781570
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||    
T  50781617 aaaactcggtatccgatccaaggatcgactaatctgaggggaccaatc 50781570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 15566499 - 15566547
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | |||||||||||||||||||||||    
T  15566499 gaaaactcggtatccgatccaagaatcgactaatctgaggggaccaatc 15566547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 25379957 - 25379911
Alignment:
Q  305 aaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||| ||||||||||| | ||||||||| |||||||||||||    
T  25379957 aaactcagtatccgatccaagaatcgactaatccgaggggaccaatc 25379911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 4252402 - 4252443
Alignment:
Q  310 cagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||| ||||||||||||| ||||||||| |||||||||||||    
T  4252402 cagtatccgatccaaggatcgactaatccgaggggaccaatc 4252443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 3747779 - 3747731
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  3747779 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 3747731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 8097278 - 8097326
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  8097278 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 8097326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 10083818 - 10083866
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  10083818 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 10083866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 10190741 - 10190789
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  10190741 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 10190789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 23890736 - 23890688
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    ||||||||||||||  || || || ||||||||||||||||||||||||    
T  23890736 aaaactcagtgtccagtctaaagatcgactaatctgaggggaccaatct 23890688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 26158997 - 26158961
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  26158997 tccgatccaaggaccgactaatccgaggggatcaatc 26158961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 26174311 - 26174263
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  26174311 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 26174263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 343
Target Start/End: Original strand, 30695257 - 30695285
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggg 343  Q
    |||||||||||||||||||||||||||||    
T  30695257 tccgatccaaggaccgactaatctgaggg 30695285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 30908551 - 30908503
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||| ||||| | |||||||||||  ||||||||||||||||||||||    
T  30908551 gaaaattcagtattcgatccaaggaatgactaatctgaggggaccaatc 30908503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 32094756 - 32094804
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| |||||||||| |||| |||||||||    
T  32094756 gaaaactcggtatccgatccaagaaccgactaatatgagaggaccaatc 32094804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 53424176 - 53424224
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  53424176 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 53424224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 53848433 - 53848481
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  53848433 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 53848481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 55371305 - 55371341
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  55371305 tccgatccaaggatcgactaatccgaggggaccaatc 55371341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 14487023 - 14486975
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||    
T  14487023 gaaaactcggtatccgatccaaggaccgactaatccgaggggaccaatc 14486975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 8192351 - 8192399
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||||||||||||||| |||||| ||||||    
T  8192351 gaaaactcggtatccgatccaaggaccgactaatccgaggggcccaatc 8192399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 15038157 - 15038109
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | |||||||||||||||||||||||    
T  15038157 gaaaactcggtatccgatccaagaatcgactaatctgaggggaccaatc 15038109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 28194137 - 28194185
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || |||||||||||||||||||||||||| | ||||||||    
T  28194137 gaaaactcggtatccgatccaaggaccgactaatctgacgagaccaatc 28194185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 41330039 - 41329991
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    ||||||| || |||| |||||| ||||||||||||||||||||||||||    
T  41330039 aaaactcggtatccggtccaagaaccgactaatctgaggggaccaatct 41329991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 31778228 - 31778180
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    ||||||| || ||||||||||| || |||||||||||| ||||||||||    
T  31778228 aaaactcggtatccgatccaagaactgactaatctgagaggaccaatct 31778180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 44946052 - 44946100
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  44946052 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 44946100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 29143 - 29190
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||||    
T  29143 aaaactcggtatccgatccaaggactgactaatctgaggggaccaatc 29190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 66951 - 66904
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||| || ||||||||||||||||||||||| |||||||||||||    
T  66951 aaaactcggtatccgatccaaggaccgactaatccgaggggaccaatc 66904  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 39343657 - 39343610
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  39343657 aaaactcagtatccgatccaaggacagactaatttgaggggaccaatc 39343610  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 54127341 - 54127389
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||||| |||| |||||| ||||||||||| |||||||||||||    
T  54127341 gaaaactcagtatccggtccaagaaccgactaatccgaggggaccaatc 54127389  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 12710373 - 12710327
Alignment:
Q  305 aaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||| || ||||||||||||||||| |||||||||| ||||||||    
T  12710373 aaactcggtatccgatccaaggaccgattaatctgaggtgaccaatc 12710327  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 345
Target Start/End: Original strand, 41621593 - 41621623
Alignment:
Q  315 tccgatccaaggaccgactaatctgagggga 345  Q
    |||||||||||||||||||||||||||||||    
T  41621593 tccgatccaaggaccgactaatctgagggga 41621623  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 27528794 - 27528843
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    |||||||| || ||||||||||| | ||||||||| ||||||||||||||    
T  27528794 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatct 27528843  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 20566536 - 20566500
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||||| | |||||||||||||||||||||||    
T  20566536 tccgatccaagaatcgactaatctgaggggaccaatc 20566500  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 22488039 - 22488075
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||||||||||||||||| |||||||| |||||    
T  22488039 tccgatccaaggaccgactaatttgaggggatcaatc 22488075  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 34844757 - 34844805
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  34844757 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 34844805  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 40058851 - 40058899
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  40058851 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 40058899  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 49288054 - 49288006
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    |||||||||| || |||||||| | ||||||||| ||||||||||||||    
T  49288054 aaaactcagtatctgatccaagaatcgactaatccgaggggaccaatct 49288006  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 52135323 - 52135276
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  52135323 aaaactcagtatccgatccaagaaccgactaatatgaggggaccaatc 52135276  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 37351454 - 37351500
Alignment:
Q  305 aaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||| || ||||||||||||||||||||||| |||||||||||||    
T  37351454 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatc 37351500  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 1486617 - 1486574
Alignment:
Q  304 aaaactcagtgtccgatccaaggaccgactaatctgaggggacc 347  Q
    ||||||| || ||||||||||||||||||||||| |||||||||    
T  1486617 aaaactcggtatccgatccaaggaccgactaatcggaggggacc 1486574  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 352
Target Start/End: Complemental strand, 16899687 - 16899652
Alignment:
Q  317 cgatccaaggaccgactaatctgaggggaccaatct 352  Q
    ||||||||||||||||||||| ||||||||||||||    
T  16899687 cgatccaaggaccgactaatccgaggggaccaatct 16899652  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 4621236 - 4621284
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  4621236 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 4621284  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 27159271 - 27159235
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||||| || |||||||||||||||||||||||    
T  27159271 tccgatccaaagatcgactaatctgaggggaccaatc 27159235  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 30677362 - 30677326
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||| |||||| |||||||||||||||||||||||||    
T  30677362 tccggtccaagaaccgactaatctgaggggaccaatc 30677326  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 46607996 - 46607960
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  46607996 tccgatccaaggaccgactaatccgaggggatcaatc 46607960  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 8479483 - 8479446
Alignment:
Q  315 tccgatccaaggaccgactaatctgaggggaccaatct 352  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  8479483 tccgatctaaggaacgactaatctgaggggaccaatct 8479446  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 3222635 - 3222683
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  3222635 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 3222683  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 15360097 - 15360145
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  15360097 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 15360145  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 34147544 - 34147496
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  34147544 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 34147496  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 34160160 - 34160112
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  34160160 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 34160112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 5081 - 5129
Alignment:
Q  303 gaaaactcagtgtccgatccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||| || ||||||||||| | ||||||||| |||||||||||||    
T  5081 gaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatc 5129  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 6013 - 5981
Alignment:
Q  319 atccaaggaccgactaatctgaggggaccaatc 351  Q
    |||||||||||||||||||||||| ||||||||    
T  6013 atccaaggaccgactaatctgaggtgaccaatc 5981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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