View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0835_low_2 (Length: 457)

Name: NF0835_low_2
Description: NF0835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0835_low_2
NF0835_low_2
[»] chr2 (1 HSPs)
chr2 (31-435)||(44731752-44732156)
[»] chr4 (4 HSPs)
chr4 (355-414)||(18912276-18912335)
chr4 (367-416)||(34670576-34670625)
chr4 (377-413)||(39593874-39593910)
chr4 (370-416)||(5112377-5112423)
[»] chr7 (8 HSPs)
chr7 (185-265)||(31169518-31169598)
chr7 (196-280)||(45685808-45685892)
chr7 (185-255)||(31151240-31151310)
chr7 (374-438)||(23580804-23580868)
chr7 (367-432)||(45685640-45685705)
chr7 (88-131)||(45685939-45685982)
chr7 (52-130)||(23603411-23603489)
chr7 (372-416)||(23402924-23402968)
[»] chr1 (7 HSPs)
chr1 (177-308)||(15857771-15857903)
chr1 (357-425)||(37918784-37918852)
chr1 (380-426)||(15864713-15864759)
chr1 (164-280)||(48382543-48382661)
chr1 (372-431)||(3019872-3019931)
chr1 (383-417)||(918389-918423)
chr1 (375-431)||(3021881-3021937)
[»] chr8 (12 HSPs)
chr8 (192-279)||(28387929-28388016)
chr8 (67-117)||(37020772-37020822)
chr8 (370-431)||(14601303-14601364)
chr8 (372-417)||(34477132-34477177)
chr8 (374-417)||(6366649-6366692)
chr8 (372-431)||(24261921-24261980)
chr8 (66-133)||(42093355-42093422)
chr8 (237-291)||(11771933-11771987)
chr8 (203-289)||(34477272-34477358)
chr8 (224-282)||(37043545-37043603)
chr8 (372-432)||(37043715-37043776)
chr8 (372-416)||(9054748-9054792)
[»] chr5 (7 HSPs)
chr5 (355-425)||(3651625-3651695)
chr5 (344-432)||(17464156-17464245)
chr5 (185-238)||(3651467-3651520)
chr5 (374-414)||(31336221-31336261)
chr5 (372-442)||(30900009-30900079)
chr5 (374-410)||(31304613-31304649)
chr5 (372-412)||(34842745-34842785)
[»] chr6 (4 HSPs)
chr6 (203-280)||(21247161-21247238)
chr6 (372-424)||(31418918-31418970)
chr6 (374-417)||(33690735-33690778)
chr6 (372-412)||(30684015-30684055)
[»] chr3 (3 HSPs)
chr3 (375-438)||(44658370-44658435)
chr3 (213-290)||(41163286-41163362)
chr3 (372-432)||(37387560-37387620)
[»] scaffold1444 (1 HSPs)
scaffold1444 (202-238)||(1142-1178)


Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 31 - 435
Target Start/End: Original strand, 44731752 - 44732156
Alignment:
Q  31 acataatgttgtaaatttcaatttaaaattacatcaataaacttagatatctagaacaaaatgaagtagtaatcaaaatcaaagtagtttaaagcaacaa 130  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44731752 acataatgttgtaaattccaatttaaaatcacatcaataaacttagatatctagagcaaaatgaagtagtaatcaaaatcaaagtagtttaaagcaacaa 44731851  T
Q  131 cgataaaaaacctaggtctacatgtgaagcaaaacctaggtttaaatgtgaaacaaaaccgcaagcataactaaagcaacaaagataatagagtagagaa 230  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44731852 caataaaaaacctaggtctacatgtgaagcaaaacctaggtctaaatgtgaaacaaaaccgcaagcataaccaaagcaacaaagataatagagtagagaa 44731951  T
Q  231 aaccaacacatcaatatttgtttacctagttcggacaaatttatcctacaactaggggagaaaacatatctccaatcccatatgaaatagattacaagaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44731952 aaccaacacatcaatatttgtttacctagttcggacaaatttatcctacaactaggggagaacacatatctccaatcccatatgaaatagattacaagaa 44732051  T
Q  331 attagatccagccttacaaagaataaccctaaattatatctatttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagtttt 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44732052 attagatccagccttacaaagaataaccctaaattatatctattttttaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagtttt 44732151  T
Q  431 ttatc 435  Q
    |||||    
T  44732152 ttatc 44732156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 18912335 - 18912276
Alignment:
Q  355 aaccctaaattatatctatttttcaaatcactcaaacccacaatgaatcctaagagaaaa 414  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  18912335 aaccctaaattatatccatttttcaagtcactcaaacccacaatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 34670625 - 34670576
Alignment:
Q  367 tatctatttttcaaatcactcaaacccacaatgaatcctaagagaaaaca 416  Q
    |||| ||||||||| ||||||| || ||||||||||||||||||||||||    
T  34670625 tatccatttttcaagtcactcacactcacaatgaatcctaagagaaaaca 34670576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 39593874 - 39593910
Alignment:
Q  377 tcaaatcactcaaacccacaatgaatcctaagagaaa 413  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39593874 tcaagtcactcaaacccacaatgaatcctaagagaaa 39593910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 5112377 - 5112423
Alignment:
Q  370 ctatttttcaaatcactcaaacccacaatgaatcctaagagaaaaca 416  Q
    |||||||| || ||||||| || ||||||||||||||||||||||||    
T  5112377 ctattttttaagtcactcacactcacaatgaatcctaagagaaaaca 5112423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 31169598 - 31169518
Alignment:
Q  185 aaaaccgcaagcataactaaagcaacaaagataatagagtagagaaaaccaacacatcaatatttgtttacctagttcgga 265  Q
    |||||| |||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||    
T  31169598 aaaaccacaagaataaccaaaacaacaaagataagagagtagagaaaaccaacacatcaatatttgttaatccagttcgga 31169518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 45685892 - 45685808
Alignment:
Q  196 cataactaaagcaacaaagataatagagtagagaaaaccaacacatcaatatttgtttacctagttcggacaaatttatcctaca 280  Q
    |||||| ||||||||||||||||  |  ||||||||||||||||| |||||| |||||||||||||  |||||||||||||||||    
T  45685892 cataaccaaagcaacaaagataaggggatagagaaaaccaacacaccaatatctgtttacctagtttagacaaatttatcctaca 45685808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 31151310 - 31151240
Alignment:
Q  185 aaaaccgcaagcataactaaagcaacaaagataatagagtagagaaaaccaacacatcaatatttgtttac 255  Q
    |||||| |||| ||||| ||| |||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  31151310 aaaaccacaagaataaccaaaacaacaaagataagagagtagagaaaaccaacacaccaatatttatttac 31151240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 23580868 - 23580804
Alignment:
Q  374 ttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagttttttatcctt 438  Q
    ||||||| |||||||||||||||||| ||| ||||||||||||| | ||||| ||||||||||||    
T  23580868 ttttcaagtcactcaaacccacaatggatcataagagaaaacaataaagaaatttttttatcctt 23580804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 45685705 - 45685640
Alignment:
Q  367 tatctatttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagtttttt 432  Q
    |||| |||||| || |||||||||  | ||||||||||||||||||||||||| ||||||||||||    
T  45685705 tatccattttttaagtcactcaaagtcgcaatgaatcctaagagaaaacaagaaagaaagtttttt 45685640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 45685982 - 45685939
Alignment:
Q  88 aaaatgaagtagtaatcaaaatcaaagtagtttaaagcaacaac 131  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||    
T  45685982 aaaatgaagtagtaatcaaaatcaatgtagtttcaagcatcaac 45685939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 23603489 - 23603411
Alignment:
Q  52 tttaaaattacatcaataaacttagatatctagaacaaaatgaagtagtaatcaaaatcaaagtagtttaaagcaacaa 130  Q
    |||||||||||| |||| |||||| || | ||||  ||||  ||| |||||||||||||||||| |||| |||||||||    
T  23603489 tttaaaattacaacaatgaacttaaatgtgtagagaaaaagaaaggagtaatcaaaatcaaagttgtttcaagcaacaa 23603411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 23402968 - 23402924
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaaaaca 416  Q
    |||||||| |||||||| || | ||||||||||||||||||||||    
T  23402968 atttttcacatcactcacactctcaatgaatcctaagagaaaaca 23402924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 15857771 - 15857903
Alignment:
Q  177 tgtgaaacaaaaccgcaagcataactaaagcaacaaagataatagagtagagaaaaccaa-cacatcaatatttgtttacctagttcggacaaatttatc 275  Q
    |||||| ||||||| ||| |||||| |||| ||||||||||| |||||| ||||||  || |||||||||||||||||||||||||||||| ||| | ||    
T  15857771 tgtgaatcaaaaccacaatcataaccaaagaaacaaagataagagagtaaagaaaaagaaacacatcaatatttgtttacctagttcggaccaatatgtc 15857870  T
Q  276 ctacaactaggggagaaaacatatctccaatcc 308  Q
    ||| | |   |||||| ||||| ||||||||||    
T  15857871 ctaaaccggagggagataacatctctccaatcc 15857903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 425
Target Start/End: Original strand, 37918784 - 37918852
Alignment:
Q  357 ccctaaattatatctatttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaa 425  Q
    ||||||||| || ||||||||||| || ||  || ||||||||||||||||||||||||||||||||||    
T  37918784 ccctaaattctacctatttttcaagtcgcttcaatccacaatgaatcctaagagaaaacaagagagaaa 37918852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 15864713 - 15864759
Alignment:
Q  380 aatcactcaaacccacaatgaatcctaagagaaaacaagagagaaag 426  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  15864713 aatcactcaaacccacaatgaatcctaagaaaaaacaatagagaaag 15864759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 48382661 - 48382543
Alignment:
Q  164 acctaggtttaaatgtgaaacaaaaccgcaagcataactaaagcaacaaagataataga-gtagaga-aaaccaacacatcaatatttgtttacctagtt 261  Q
    |||||| | ||| |||||| ||| ||| ||| ||||| ||||||||||||||||||| | | ||||| ||| ||||||| ||||||||||||| | ||||    
T  48382661 acctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataataaaagaagagacaaaacaacacaccaatatttgtttatccagtt 48382562  T
Q  262 cggacaaatttatcctaca 280  Q
    | |||||||||||| ||||    
T  48382561 cagacaaatttatcataca 48382543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 3019872 - 3019931
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagttttt 431  Q
    ||||||||| ||||||||||||| |||||||||| | ||||||||| | |||||||||||    
T  3019872 atttttcaagtcactcaaacccaaaatgaatcctgatagaaaacaataaagaaagttttt 3019931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 918423 - 918389
Alignment:
Q  383 cactcaaacccacaatgaatcctaagagaaaacaa 417  Q
    |||||||||||||||||||||||||||||||||||    
T  918423 cactcaaacccacaatgaatcctaagagaaaacaa 918389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 3021881 - 3021937
Alignment:
Q  375 tttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagttttt 431  Q
    |||||| || |||||||||||||||||| |||| ||||||||| | | |||||||||    
T  3021881 tttcaagtccctcaaacccacaatgaatgctaatagaaaacaataaaaaaagttttt 3021937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 28387929 - 28388016
Alignment:
Q  192 caagcataactaaagcaacaaagataatagagtagagaaaaccaacacatcaatatttgtttacctagttcggacaaatttatcctac 279  Q
    |||||||||  ||||||||||||||||   |  | ||||||||||||||  |||||||||| |||||||||||| |||||||||||||    
T  28387929 caagcataatgaaagcaacaaagataaactacaaaagaaaaccaacacactaatatttgttcacctagttcggataaatttatcctac 28388016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 37020772 - 37020822
Alignment:
Q  67 ataaacttagatatctagaacaaaatgaagtagtaatcaaaatcaaagtag 117  Q
    ||||||||| |||| |||| ||| |||||||||||||||||||||||||||    
T  37020772 ataaacttacatatgtagagcaacatgaagtagtaatcaaaatcaaagtag 37020822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 14601303 - 14601364
Alignment:
Q  370 ctatttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagttttt 431  Q
    ||||||||||| |||||||||| ||| |||||||||| |||||||||| | |||||| ||||    
T  14601303 ctatttttcaagtcactcaaacgcacgatgaatcctatgagaaaacaataaagaaagctttt 14601364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 34477177 - 34477132
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaaaacaa 417  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  34477177 atttttcaagtcactcaaatccacaatgaatccaaagagaaaacaa 34477132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 6366649 - 6366692
Alignment:
Q  374 ttttcaaatcactcaaacccacaatgaatcctaagagaaaacaa 417  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||    
T  6366649 ttttcaattcactcaaactaacaatgaatcctaagagaaaacaa 6366692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 24261921 - 24261980
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagttttt 431  Q
    |||||| || ||||||||| ||| |||||||| ||||||||||||| | |||||||||||    
T  24261921 attttttaagtcactcaaatccaaaatgaatcataagagaaaacaataaagaaagttttt 24261980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 42093422 - 42093355
Alignment:
Q  66 aataaacttagatatctagaacaaaatgaagtagtaatcaaaatcaaagtagtttaaagcaacaacga 133  Q
    ||||||||||||| | ||||  ||||||||  ||||||||||| ||||||| ||| ||||||||||||    
T  42093422 aataaacttagatgtgtagagtaaaatgaatgagtaatcaaaagcaaagtaatttcaagcaacaacga 42093355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 11771933 - 11771987
Alignment:
Q  237 cacatcaatatttgtttacctagttcggacaaatttatcctacaactaggggaga 291  Q
    |||| |||||||||||||| || |||||||||||||||  |||| ||||||||||    
T  11771933 cacaccaatatttgtttacttacttcggacaaatttatgttacatctaggggaga 11771987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 34477358 - 34477272
Alignment:
Q  203 aaagcaacaaagataatagagtagagaaaaccaacacatcaatatttgtttacctagttcggacaaatttatcctacaactagggga 289  Q
    ||||||| |||||||| | || |||||  | ||||||| ||||||||||||| | |||||| | |||||||||||||| || |||||    
T  34477358 aaagcaataaagataagaaagaagagaggatcaacacaccaatatttgtttagccagttcgaaaaaatttatcctacatcttgggga 34477272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 37043545 - 37043603
Alignment:
Q  224 tagagaaaaccaacacatcaatatttgtttacctagttcggacaaatttatcctacaac 282  Q
    |||||||||||||||||  |||||||||||||| |||| |||| ||| | |||||||||    
T  37043545 tagagaaaaccaacacacaaatatttgtttacccagttaggaccaatatgtcctacaac 37043603  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 37043715 - 37043776
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagag-aaaacaagagagaaagtttttt 432  Q
    ||||||||| |||||||||||| |||||||| |||| || ||||||| ||| ||||||||||    
T  37043715 atttttcaagtcactcaaacccgcaatgaatactaatagaaaaacaaaagataaagtttttt 37043776  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 9054792 - 9054748
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaaaaca 416  Q
    ||||||||| ||||||| || | ||||||||||||||||||||||    
T  9054792 atttttcaagtcactcacactctcaatgaatcctaagagaaaaca 9054748  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 3651625 - 3651695
Alignment:
Q  355 aaccctaaattatatctatttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaa 425  Q
    |||||||| || || | ||||||||| ||||||||||| | |||||||||||||| |||||||||||||||    
T  3651625 aaccctaatttctacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaa 3651695  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 17464156 - 17464245
Alignment:
Q  344 ttacaaagaataa-ccctaaattatatctatttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagtttttt 432  Q
    ||||||||||||| |||||| ||  ||||||||||||| ||||||||||||| |||||||  ||||| ||||||| | |||||| |||||    
T  17464156 ttacaaagaataaaccctaacttcaatctatttttcaagtcactcaaacccataatgaattttaagacaaaacaataaagaaagcttttt 17464245  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 3651467 - 3651520
Alignment:
Q  185 aaaaccgcaagcataactaaagcaacaaagataatagagtagagaaaaccaaca 238  Q
    |||||| |||||||||| ||| ||||||||| || |||||||||||||||||||    
T  3651467 aaaaccacaagcataaccaaaacaacaaagacaaaagagtagagaaaaccaaca 3651520  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 31336221 - 31336261
Alignment:
Q  374 ttttcaaatcactcaaacccacaatgaatcctaagagaaaa 414  Q
    ||||||| ||||||||||||||||| |||||||||||||||    
T  31336221 ttttcaagtcactcaaacccacaataaatcctaagagaaaa 31336261  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 442
Target Start/End: Original strand, 30900009 - 30900079
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaag-ttttttatccttcctc 442  Q
    |||||||||  ||||||||||||||| ||||||| ||||||||||  | |||||| ||||||||||||||||    
T  30900009 atttttcaagccactcaaacccacaaagaatcct-agagaaaacactaaagaaagcttttttatccttcctc 30900079  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 31304613 - 31304649
Alignment:
Q  374 ttttcaaatcactcaaacccacaatgaatcctaagag 410  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  31304613 ttttcaagtcactcaaacccacaataaatcctaagag 31304649  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 34842745 - 34842785
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaa 412  Q
    ||||||||| ||||| ||||||||||||||| |||||||||    
T  34842745 atttttcaagtcactaaaacccacaatgaattctaagagaa 34842785  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 21247238 - 21247161
Alignment:
Q  203 aaagcaacaaagataatagagtagagaaaaccaacacatcaatatttgtttacctagttcggacaaatttatcctaca 280  Q
    ||||||| |||||||| | || ||||| || ||||||| ||||| || |||| | |||||||||||||||||||||||    
T  21247238 aaagcaagaaagataagaaagaagagagaatcaacacaccaatagttatttatccagttcggacaaatttatcctaca 21247161  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 31418970 - 31418918
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaa 424  Q
    ||||||||| ||||||||||||||||  ||| |||||||||| ||||||||||    
T  31418970 atttttcaagtcactcaaacccacaacaaattctaagagaaatcaagagagaa 31418918  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 33690778 - 33690735
Alignment:
Q  374 ttttcaaatcactcaaacccacaatgaatcctaagagaaaacaa 417  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||    
T  33690778 ttttcaagtcactcaaacccacgatgaatcctaagaaaaaacaa 33690735  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 30684015 - 30684055
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaa 412  Q
    ||||||||| ||||||||||||||||| ||||| |||||||    
T  30684015 atttttcaagtcactcaaacccacaataaatccgaagagaa 30684055  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 438
Target Start/End: Complemental strand, 44658435 - 44658370
Alignment:
Q  375 tttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaag--ttttttatcctt 438  Q
    |||||| ||||||||||||||||| ||||| ||||||||| || | ||||||  ||||||||||||    
T  44658435 tttcaagtcactcaaacccacaattaatcccaagagaaaataataaagaaagatttttttatcctt 44658370  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 41163362 - 41163286
Alignment:
Q  213 agataatagagtagagaaaaccaacacatcaatatttgtttacctagttcggacaaatttatcctacaactaggggag 290  Q
    |||||| |||||||| | || ||||||| ||||||||||||||||||||||| | ||| |  |||||| |||||||||    
T  41163362 agataagagagtaga-agaatcaacacaccaatatttgtttacctagttcggcctaatatgacctacatctaggggag 41163286  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 37387560 - 37387620
Alignment:
Q  372 atttttcaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagtttttt 432  Q
    ||||||||| ||||| ||||| |||||||||||||| |  || ||||||| ||||||||||    
T  37387560 atttttcaagtcacttaaaccgacaatgaatcctaaaaataaccaagagaaaaagtttttt 37387620  T

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Target: scaffold1444 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 1142 - 1178
Alignment:
Q  202 taaagcaacaaagataatagagtagagaaaaccaaca 238  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  1142 taaagcaacaaagataagagagtagagaaaactaaca 1178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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