View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0835_low_5 (Length: 406)
Name: NF0835_low_5
Description: NF0835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0835_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 27 - 361
Target Start/End: Original strand, 27574456 - 27574792
Alignment:
| Q |
27 |
ctcaaaatactttt-gttcggattatattaatccgaaccacatttgaattatataatctagattttcatgacccttttgtaacttggagcaccctaaagc |
125 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27574456 |
ctcaaaatactttttgttcggattatattaatccgaatcacgtttggattatataatctcgattttcatgacccttttgtaacttggagcaccctaaagc |
27574555 |
T |
|
| Q |
126 |
atcttgaagttgaaatgcataagataggttcgaattatatacgaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaaca-ccccatgg |
224 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||| |||||||| |
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| T |
27574556 |
atcttgaagttgaaatgcataagataggttcgaattatatacgaaaacatttaagccagtttggattttaaaatgcgaaacgtgtcaaacacccccatgg |
27574655 |
T |
|
| Q |
225 |
aaagtcaacagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaacaattcggattatataatccgaagtatgggtgtttaa |
324 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27574656 |
aaagtcaacagttggagggaaaatagggtatttcggattatataatctgaaatgtctaataaacaattcggattatataatccgaagtatgggtgtttaa |
27574755 |
T |
|
| Q |
325 |
atcaaaaccgatttaaatgaaaactgcaaaccgatcc |
361 |
Q |
| |
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||| ||||||||||||||||||||||||||| ||||| |
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| T |
27574756 |
atctaaaccgatttaaatgaaaactgcaaactgatcc |
27574792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 36 - 312
Target Start/End: Complemental strand, 25967396 - 25967118
Alignment:
| Q |
36 |
cttttgttcggattatattaatccgaaccacatttgaattatataatctagattttcatgacccttttgtaacttggagcaccctaaagcatcttgaagt |
135 |
Q |
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|||||||||| ||||||| ||| |||||| |||||| ||||||||||| ||||| | ||||||| |||||| ||||||||| | ||| |||||||||| |
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| T |
25967396 |
cttttgttcgaattatat-aattcgaaccgcatttggattatataatcataatttttacgacccttctgtaacatggagcaccttgaaggatcttgaagt |
25967298 |
T |
|
| Q |
136 |
tgaaatgcataagataggttcgaattatata---cgaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacaccc-catggaaagtca |
231 |
Q |
| |
|
|||| | ||||| ||||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
25967297 |
tgaagtacataaattaggttcgaattatataatccgaaaaaatttaag-cagtttggataataaaatccaaaacgtgtcaaacaccctcatggaaagtca |
25967199 |
T |
|
| Q |
232 |
acagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaacaattcggattatataatccgaagt |
312 |
Q |
| |
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||| |||||||||| | |||| ||||| ||| ||||||| |||||||||||||||| ||| |||||||||||| ||||| |
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|
| T |
25967198 |
acaattggagggaaaaaggggtgtttcggattttataatccgaaatgtctaataaacgattgagattatataatcagaagt |
25967118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 95 - 312
Target Start/End: Original strand, 32462463 - 32462687
Alignment:
| Q |
95 |
gacccttttgtaacttggagcaccctaaagcatcttgaagttgaaatgcataagataggttcgaattatata-------cgaaaacatttaagtcagttt |
187 |
Q |
| |
|
||||||||| |||| || |||||||| ||| ||||||| | | || |||||| ||| |||||| |||||||| ||||||||||| || | ||| |
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| T |
32462463 |
gacccttttctaacctgaagcaccctgaaggatcttgatgctaaagtgcataggattggttcggattatataattaatccgaaaacattttagcctgttc |
32462562 |
T |
|
| Q |
188 |
ggattttaaaatccaaaacgtgtcaaacaccccatggaaagtcaacagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaa |
287 |
Q |
| |
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||||| || |||| |||||||||||||||||||| ||||||||| ||||||||| | |||| |||| ||||||||||| ||||||| ||||||| |
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| T |
32462563 |
ggattatataatctgtaacgtgtcaaacaccccatgaaaagtcaaccaatggagggaaaaaggggtgtttctgattatataatccgaaatgtataataaa |
32462662 |
T |
|
| Q |
288 |
caattcggattatataatccgaagt |
312 |
Q |
| |
|
||||| |||||| |||||||||||| |
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|
| T |
32462663 |
caatttggattacataatccgaagt |
32462687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 15344736 - 15344623
Alignment:
| Q |
113 |
agcaccctaaagcatcttgaagttgaaatgcataagataggttcgaattatata--cgaaaac-atttaagtcag-tttggattttaaaatccaaaacgt |
208 |
Q |
| |
|
|||||| | ||| |||| |||| |||| |||||| ||||||||||||||||||| | ||||| |||| ||| || |||||||| |||||||| ||| || |
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|
| T |
15344736 |
agcaccttgaaggatctcgaagctgaagtgcataggataggttcgaattatataatccaaaacaattttagttagttttggattataaaatccgaaatgt |
15344637 |
T |
|
| Q |
209 |
gtcaaacaccccat |
222 |
Q |
| |
|
|||||||||||||| |
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|
| T |
15344636 |
gtcaaacaccccat |
15344623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 32421743 - 32421551
Alignment:
| Q |
123 |
agcatcttgaagttgaaatgcataagataggttcgaattatatac---gaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacaccc |
219 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| ||||| |||||||| |||||| | |||| ||||||||||| || |||| |||||| ||||||||| | |
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|
| T |
32421743 |
agcaccttgaagctgaactgcataagatatgttcggattatataatctgaaaacttgtaagccagtttggattatataatctaaaacgagtcaaacactc |
32421644 |
T |
|
| Q |
220 |
catggaaagtcaacagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaacaattcggattatataatccgaagt |
312 |
Q |
| |
|
|||||||||||||| || ||||||| || ||| ||||||||||||||||||||||||| ||| || || ||||||||||| |||| ||||| |
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|
| T |
32421643 |
gatggaaagtcaacaatttgagggaaaatgtggtgtttcgaattatataatctgaaatgtgtaaaaatcatttcggattatacaatctgaagt |
32421551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 27 - 312
Target Start/End: Complemental strand, 14913266 - 14912979
Alignment:
| Q |
27 |
ctcaaaatac-ttttgttcggattatattaatccgaaccacatttgaattatataatctagattttcatgacccttttgtaacttggagcaccctaaagc |
125 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| | |||| ||||||||||| | | || | ||||||||||| || | | |||||| || |
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|
| T |
14913266 |
ctcaaaataccttttgttcggattatat-aatccgaactaagtttggattatataatccaaaactttacaacccttttgtacct-gaatcaccctggagg |
14913169 |
T |
|
| Q |
126 |
atcttgaagttgaaatgcataagataggttcgaattatatac---gaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacaccccat |
222 |
Q |
| |
|
||||||| |||||| || || ||||||||||||||||||| ||| ||| || ||||||||||| | ||| ||||||||||||||| |||| |
|
|
| T |
14913168 |
atcttgatgttgaagtgtttaggataggttcgaattatataatctgaatttgttttaggcagtttggattacataatttgaaacgtgtcaaacacaccat |
14913069 |
T |
|
| Q |
223 |
ggaaagtcaacagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaacaattcggattatataatccgaagt |
312 |
Q |
| |
|
| |||||||| | |||||||||| || |||| ||||| |||| ||||| |||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14913068 |
gaaaagtcaaaaattggagggaacatggggtgtttcggattaaataatatgaaatgtctaataaacatttcggattatacaatccgaagt |
14912979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 25363770 - 25363881
Alignment:
| Q |
126 |
atcttgaagttgaaatgcataagataggttcgaattatata---cgaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacaccccat |
222 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| | | ||||| |||| ||||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
25363770 |
atcttgaagttgaagtgcataagataggttcggcttatataattcaataacatgtaagccagtttggattatataatccgaaacgtgtcaaacatcccat |
25363869 |
T |
|
| Q |
223 |
ggaaagtcaaca |
234 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
25363870 |
gaaaagccaaca |
25363881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 36892536 - 36892391
Alignment:
| Q |
138 |
aaatgcataagataggttcgaattatata---cgaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacac-cccatggaaagtcaac |
233 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||| | |||||| || |||||||| |||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
36892536 |
aaatgcacgagataggttcgaactatatattccgaacaattttaagccaatttggattataaaatccaaaacgtgtcaaacacacccatgaaaagtcaac |
36892437 |
T |
|
| Q |
234 |
agttggagggaagatagggtatttcgaattatataatctgaaatgtc |
280 |
Q |
| |
|
| || ||| ||| |||| || ||||| ||||||||||| ||||||| |
|
|
| T |
36892436 |
aatttgagagaaaatagagtgtttcg-attatataatccaaaatgtc |
36892391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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