View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0835_low_8 (Length: 316)
Name: NF0835_low_8
Description: NF0835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0835_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 81 - 316
Target Start/End: Original strand, 1118876 - 1119111
Alignment:
| Q |
81 |
acaaccatgggcaaaccaaaaccctaattgacactttcagtattgcggtttcagtggtctcttcttaggtttagggtcatcctttatacaatttgagaat |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1118876 |
acaaccatgggcaaaccaaaaccctaattgacactttcagtattgcggtttcagtggtctcttcttaggtttagggtcatcctttatacaatttgagaat |
1118975 |
T |
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| Q |
181 |
agcatgaacaacttgggataaatacataactgatctaatatggtcttgaacacaatattctagaagcatatatacagtttccttagatgttttgacatca |
280 |
Q |
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| T |
1118976 |
aacatgaacaacttgggataaacacataactgatctaatatgctcttgaacacaatattctggaagcatatatacagtttccttagatgttttgacatca |
1119075 |
T |
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| Q |
281 |
ttcttagtaaacacgacaaatcttaaacctctcttt |
316 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
1119076 |
ttcttaggaaacacgacaaatcttaaacctctcttt |
1119111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 10374451 - 10374344
Alignment:
| Q |
199 |
taaatacataactgatctaatatggtcttgaacacaatattctagaagcatata--tacagtttccttagatgttttgacatcattcttagtaaacacga |
296 |
Q |
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|||| ||| |||||||| ||||||||||| |||||||||||| |||||||||| || ||||||||| ||||||| ||||| | ||| |||||||| |
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| T |
10374451 |
taaacacacaactgatccaatatggtcttcaacacaatattccggaagcatatatttattgtttccttaaatgttttaacatccattatagaaaacacga |
10374352 |
T |
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| Q |
297 |
caaatctt |
304 |
Q |
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|| ||||| |
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| T |
10374351 |
catatctt |
10374344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 306
Target Start/End: Complemental strand, 17840968 - 17840735
Alignment:
| Q |
81 |
acaaccatgggcaaaccaaaaccctaattgacactttcagtattgcggtttcagtggtctcttcttaggtttagggtcatcctttatacaatttgagaat |
180 |
Q |
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||||| |||| || || |||||||||||||||||||||| | ||||| |||||| || | ||||||||||| ||| ||||||||| | | ||||||| |
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| T |
17840968 |
acaacaatggacagactaaaaccctaattgacactttcacaaatgcggcttcagtagtat--tcttaggtttaaagtcttcctttatatagtctgagaat |
17840871 |
T |
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| Q |
181 |
agcatg---------aacaacttgggataaatacataactgatctaatatggtcttgaacacaatattctagaagcatatatacagtttccttagatgtt |
271 |
Q |
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|||||| ||||| | | | |||| ||| |||| ||| ||||||||||| ||||||||||||| ||||||| |||| ||||||||| || || |
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| T |
17840870 |
agcatgggcttgatgaacaattcgagctaaacacacaacttatccaatatggtcttcaacacaatattctggaagcatgtatattgtttccttaaatttt |
17840771 |
T |
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| Q |
272 |
ttgacat-cattcttagtaaacacgacaaatcttaa |
306 |
Q |
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|||| || |||| | || |||||||||||||||||| |
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| T |
17840770 |
ttgaaatccattataaggaaacacgacaaatcttaa |
17840735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 21713041 - 21712966
Alignment:
| Q |
232 |
acaatattctagaagcatatatacagtttccttagatgttttgacat-cattcttagtaaacacgacaaatcttaa |
306 |
Q |
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| T |
21713041 |
acaatattccagaagcatatatattgtttccttaaatgttttgacatccattcttaggaaacacgacaaagcttaa |
21712966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 31067288 - 31067220
Alignment:
| Q |
98 |
aaaaccctaattgacactttcagtattgcggtttcagtggtctcttcttaggtttagggtcatcctttata |
168 |
Q |
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|||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||| ||| ||||||||| |
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| T |
31067288 |
aaaaccctaattgatactttcagaattgcggcttcagtgg--tcttcttaggtttagagtcttcctttata |
31067220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 15325426 - 15325536
Alignment:
| Q |
199 |
taaatacataactgatctaatatggtcttgaacacaatattctagaagcatatatacagtttccttagatgttttgacatcattcttagtaaacacgaca |
298 |
Q |
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|||| ||| ||||| ||||||| |||||| |||| |||||| ||||||||||| ||||||||| |||||||||||||||||||| ||||||| | |
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| T |
15325426 |
taaacacacaactggtctaatacggtcttcaacataatatttcgaaagcatatatattgtttccttaaatgttttgacatcattcttaaaaaacacggta |
15325525 |
T |
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| Q |
299 |
aatcttaaacc |
309 |
Q |
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|| |||||||| |
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| T |
15325526 |
aagcttaaacc |
15325536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 18594108 - 18594160
Alignment:
| Q |
258 |
tttccttagatgttttgacatc-attcttagtaaacacgacaaatcttaaacc |
309 |
Q |
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| T |
18594108 |
tttccttaaatgttttgacatctattcttaggaaacacgaaaaatcttaaacc |
18594160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 38802074 - 38802003
Alignment:
| Q |
81 |
acaaccatgggcaaaccaaaaccctaattgacactttcagtattgcggtttcagtggtctcttcttaggtttag |
154 |
Q |
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||||| |||| || || ||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||| |
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| T |
38802074 |
acaacaatggacatactaaaaccctaattgacactttcagaattgcggcttcagtag--tcttcttaggtttag |
38802003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 4649984 - 4649895
Alignment:
| Q |
210 |
ctgatctaatatggtcttgaacacaatattctagaagcatatatacagtttccttagatgttttgacatcattcttagtaaacacgacaa |
299 |
Q |
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|||||| |||| |||||| | ||||||||||| |||||||||||| ||||||||| ||||| |||||| |||| ||||||||||| |
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| T |
4649984 |
ctgatccaatacggtcttcagcacaatattctggaagcatatatattgtttccttaaatgttacaacatcacccttaaaaaacacgacaa |
4649895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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