View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_1 (Length: 800)
Name: NF0836_high_1
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 39444863 - 39445292
Alignment:
| Q |
1 |
ttgatgcacaattcaggatcggatgttcaggtttttctctctctcattactttagatctggtattcttcctaaaaggaaaggctctttctatattcatag |
100 |
Q |
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| T |
39444863 |
ttgatgcacaattcaggatcggatgttcaggttttt-tctctctcattactttagatctggtcttcttcctaaaaggaaaggctctttctatattcatag |
39444961 |
T |
|
| Q |
101 |
agattttatcatgaatttccccagggccatgttgaattaacaaaccagggccatctaattcaatgtgtgatagtgaacgggataaacgtaattagaggtg |
200 |
Q |
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| T |
39444962 |
agattttatcatgaatttccccagggccatgttgaattaacaaaccagggccatctaattcaatgtgtgatagtgaacgggataaacgtaattggaggtg |
39445061 |
T |
|
| Q |
201 |
taagttagggaacagaaaaatcataattgcacatgtatccttttaatcatgttttgaagatgaatagggaaattgattttggcgtattagggcttcttat |
300 |
Q |
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| T |
39445062 |
taagttagggaacagaaaaatcataattgcacatgtagccttttaatcatgttttgaagatgaatagggaaattgattttggcggattagggcttcttat |
39445161 |
T |
|
| Q |
301 |
aacaatacttttttgattttgaagttttgttagctgtggcattacatccattgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaa |
400 |
Q |
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| T |
39445162 |
aacaatactttttttattttgaaattttgttagcagtggcattacatccattgttgttgccgcaaagagtgatgaaaccaaatacagcacctaaagaaaa |
39445261 |
T |
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| Q |
401 |
atttcaagaaaattatatcatcaacattttt |
431 |
Q |
| |
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| T |
39445262 |
atttcaagaaaattatattatcaacattttt |
39445292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 426 - 704
Target Start/End: Original strand, 39446083 - 39446352
Alignment:
| Q |
426 |
atttttctatatactggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggagagattttttattattann |
525 |
Q |
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| T |
39446083 |
atttttctatatattggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgttaaggagagattttttttttct--- |
39446179 |
T |
|
| Q |
526 |
nnnnnnnnnngtatttaccctctagtttcaacgagaagggctctcgtaatcctgaattcggttgggagataagtaaaatttgaccaaaaaatatttcact |
625 |
Q |
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| T |
39446180 |
------ttttgtatttaccctctggtttcaacgagaagggctctcgtaatcctgaattcggttgggagagaaataaaatttggccaacaaatgtttcact |
39446273 |
T |
|
| Q |
626 |
taagaattgaacccaagttctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggttat |
704 |
Q |
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| T |
39446274 |
ttagaatcgaatccaaattctcctaaaaaatttgttatcggtggagttcatcaacaattgaggtcaaatgtttggttat |
39446352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 645 - 704
Target Start/End: Original strand, 39467630 - 39467689
Alignment:
| Q |
645 |
ctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggttat |
704 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||| |
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| T |
39467630 |
ctcctaaaaaaatcgtccttggtggagttcatcaacaattaatctcaaatgtttggttat |
39467689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 349 - 508
Target Start/End: Original strand, 35314772 - 35314931
Alignment:
| Q |
349 |
cattgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacatttttctatatactggaggatt |
448 |
Q |
| |
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|||| |||||||| || ||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||| || ||| | ||| ||| |
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| T |
35314772 |
cattattgttgccacatagagtgatgaaactaaatacagctgctaaagaaaaattcaaagaaaattatattatcaacattttt-taaatattagagaatt |
35314870 |
T |
|
| Q |
449 |
ga-attaaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggaga |
508 |
Q |
| |
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| T |
35314871 |
gatattaaattaaatagaattttacattggcgataaatctaacaaacatttattaaggaga |
35314931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 499
Target Start/End: Original strand, 35315621 - 35315858
Alignment:
| Q |
251 |
gttttgaagatgaatagggaaattgattttggcgtattagggcttcttataacaatacttttttgattttgaagttttgttagctgtggcattacatcca |
350 |
Q |
| |
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| T |
35315621 |
gtttttaagataaatagggagattcattttggagggttagggtttcttataacaatgcttgttcgactttgaaattttgttagcaccgatattgcatgca |
35315720 |
T |
|
| Q |
351 |
ttgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacatttttctatatactggaggattga |
450 |
Q |
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| T |
35315721 |
ttgttgttgctactaagagcggtgaaaccaaatatagttgctaaagaaaaa------------tatattatcaacatttttttaaatattggaggattga |
35315808 |
T |
|
| Q |
451 |
-attaaattaaatagaacttgacattggaaataaatctaacaaacatttg |
499 |
Q |
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|||||||||||||||| |||||| | ||||| ||| ||||||||||| |
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| T |
35315809 |
tattaaattaaatagaatttgacactaacaataactcttacaaacatttg |
35315858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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