View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_10 (Length: 703)
Name: NF0836_high_10
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 14884335 - 14883746
Alignment:
| Q |
1 |
acaattcttttcaaactaccttaaaccaaaaatagcattaacaatgaaactatcaatactttttctcttatgcttcttctcttgtgttctattagtcctt |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14884335 |
acaattcttttcaaactagcttaaaccaaaaatagcattaacaatgaaagtatctatactttttctcttatgcttcttctcttgtgttctattagtcctt |
14884236 |
T |
|
| Q |
101 |
tgtcatgataatgataaaaccactttgaatgtgcttttggaggtgaaatcatcttttacagaagaccctgaaaatgttcttagtacttggtctgaaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14884235 |
tgtcatgataatgataaaaccactttgaatgtgcttttggaggtgaaatcatcttttacagaagaccctgaaaatgttcttagtacttggtctgaaaaca |
14884136 |
T |
|
| Q |
201 |
acactgattactgtacttggagaggtatttcatgtgactcggtgagtcgtgacatagttagactcgttttgtctaactcaaaactcactgggtcaatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14884135 |
acactgattactgtacttggagaggtatttcatgtgactcggtgagtcgtgacatagttagactcgttttgtctaactcaaaactcactgggtcaatttc |
14884036 |
T |
|
| Q |
301 |
accttctatcggtcttttacaaaacctaactcaccttgatctttcatcaaaccatattgtgggtcccattccaccttctctctccaaacttactaaacta |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14884035 |
accttttatcggtcttttacaaaacctaactcaccttgatctttcatcaaaccatattgtgggtcccattccaccttctctctccaaacttactaaacta |
14883936 |
T |
|
| Q |
401 |
gaatctttgcttttgttctccaaccaactgacgagtcaaattcctgttgagtttggctcgttggtgaatctccgatttttgcgactcggtgataatcaac |
500 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14883935 |
gaatctttgcttttgttctccaaccaacttacgagtcaaattcccgctgattttggctcgttagtgaatctccgatttttgcgactcggtgataatcaac |
14883836 |
T |
|
| Q |
501 |
tcagtggtgaaattccctcttcattaggcaatcttgctaaacttgtcacccttgggttagcttcatgcaaactcaacggttcgatcccga |
590 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14883835 |
tcagtggtgaaattccctcttcattaggcaatcttgttaaacttgtcacccttgggttagcttcatgcaaactcaacggttcgatcccga |
14883746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 14870145 - 14869841
Alignment:
| Q |
1 |
acaattcttttcaaactaccttaaaccaaaaatagcattaacaatgaaactatcaatactttttctcttatgcttcttctcttgtgttctattagtcctt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14870145 |
acaattcttttcaaactagcttaaaccaaaaatagcattaacaatgaaagtatcgatactttttctcttatgcttcttctcttgtgttctattagtcctt |
14870046 |
T |
|
| Q |
101 |
tgtcatgataatgataaaaccactttgaatgtgcttttggaggtgaaatcatcttttacagaagaccctgaaaatgttcttagtacttggtctgaaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14870045 |
tgtcatgataatgataaaaccactttgaatgtgcttttggaggtgaaatcatcttttacagaagaccctgaaaatgttcttagtacttggtctgaaaaca |
14869946 |
T |
|
| Q |
201 |
acactgattactgtacttggagaggtatttcatgtgactcggtgagtcgtgacatagttagactcgttttgtctaactcaaaactcactgggtcaatttc |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869945 |
acaccgattactgtacttggagaggtatttcatgtgactcggtgagtcgtgacatagttagactcgttttgtctaactcaaaactcactgggtcaatttc |
14869846 |
T |
|
| Q |
301 |
acctt |
305 |
Q |
| |
|
||||| |
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|
| T |
14869845 |
acctt |
14869841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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