View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_103 (Length: 266)
Name: NF0836_high_103
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_103 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 21270625 - 21270856
Alignment:
| Q |
32 |
tgaaacatcgatattacactatacaaaactattgggtggcagttgccaacccaatctatcccaatgagtttgttgtagtgacgagtgctgctcctcaact |
131 |
Q |
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| T |
21270625 |
tgaaacatcgatattacactatacaaaactattgggtggtagtttccaactcaatctatcccaatgagtttgttgtagtgacgaatgctgctcctcaact |
21270724 |
T |
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| Q |
132 |
tgacgtgcattccgccattctgttgagatccagtaccctctaaatattttttg--------------caaattgggtgcagtcccctctatgaataattt |
217 |
Q |
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| T |
21270725 |
tgacgtgcattccgccattctgttgagatccagtaccctctaaatattttttgcaaattgatggtcccaaattgggtgcagtcccctctatgaataattt |
21270824 |
T |
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| Q |
218 |
ctgcaatcccctcattttgatggtcccaaatt |
249 |
Q |
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| T |
21270825 |
ctgcaatcccctcattttgatggtcccaaatt |
21270856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 6955555 - 6955603
Alignment:
| Q |
201 |
ccctctatgaataatttctgcaatcccctcattttgatggtcccaaatt |
249 |
Q |
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| T |
6955555 |
ccctctatgaataatttctgccatcccctcattttgatggtcccaaatt |
6955603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 6955483 - 6955542
Alignment:
| Q |
95 |
atgagtttgttgtagtgacgagtgctgctcctcaacttgacgtgcattccgccattctgt |
154 |
Q |
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| T |
6955483 |
atgagtttgttgtcgtgacgacggcagctcctcaatttgacgtgcattccgccattctgt |
6955542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 6750819 - 6750867
Alignment:
| Q |
201 |
ccctctatgaataatttctgcaatcccctcattttgatggtcccaaatt |
249 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
6750819 |
ccctctatgaatgatttctgccatcccctcattttgatggtcccaaatt |
6750867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 6467710 - 6467662
Alignment:
| Q |
201 |
ccctctatgaataatttctgcaatcccctcattttgatggtcccaaatt |
249 |
Q |
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| T |
6467710 |
ccctctatgaatgatttctgccatcccttcattttgatggtcccaaatt |
6467662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 6467779 - 6467723
Alignment:
| Q |
98 |
agtttgttgtagtgacgagtgctgctcctcaacttgacgtgcattccgccattctgt |
154 |
Q |
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| T |
6467779 |
agtttgttgccgtgacgagggcagctcctcaatttgacgtgcattttgccattctgt |
6467723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 8746949 - 8747008
Alignment:
| Q |
95 |
atgagtttgttgtagtgacgagtgctgctcctcaacttgacgtgcattccgccattctgt |
154 |
Q |
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| T |
8746949 |
atgagtttgttgtcgtgacgagggcagctcctcaatttgacgtgcattccaccattctgt |
8747008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 8747033 - 8747069
Alignment:
| Q |
213 |
aatttctgcaatcccctcattttgatggtcccaaatt |
249 |
Q |
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| T |
8747033 |
aatttctgccatcccctcattttgatggtcccaaatt |
8747069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 22008978 - 22009072
Alignment:
| Q |
60 |
ctattgggtggcagttgccaacccaatctatcccaatgagtttgttgtagtgacgagtgctgctcctcaacttgacgtgcattccgccattctgt |
154 |
Q |
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|||||||||||| ||||||| | || ||||| |||||||||||| ||||||| || |||||||| |||||||||||||||||||||||| |
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| T |
22008978 |
ctattgggtggccgttgccatcacaccctatcttgatgagtttgttgccgtgacgaaggcaactcctcaatttgacgtgcattccgccattctgt |
22009072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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