View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_111 (Length: 258)
Name: NF0836_high_111
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_111 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 51688803 - 51688993
Alignment:
| Q |
37 |
caacaaaatggtcaagtaaataaatatatttatcttggttgttggctaggggtgagaacatgctattctgaattttgatgcagctgagcctgagcctgag |
136 |
Q |
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| T |
51688803 |
caacaaaatggtcaagtaaataaatatatttatcttggttgttggctaggggtgagaacatgctattctgaattttgatgcagctga------------g |
51688890 |
T |
|
| Q |
137 |
cctgagccacataatatattacagtaaggacactgaactgtatatgtaaaatttataaacaacctgcagaagaggtagctacagaaaaaggttgatatat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51688891 |
cctgagccacataatatattacagtaaggacactgaactgtatatgtaaaatttataaacaacctgcagaagaggtagctacagaaaaaggttgatatat |
51688990 |
T |
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