View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_high_112 (Length: 258)
Name: NF0836_high_112
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_112 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 35933881 - 35933680
Alignment:
| Q |
29 |
accattatcgttggagtagtcctttacattatattgatacaccagatttcaaatgtaactatcaatattgcagtaagtaattcaattctttttccaataa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35933881 |
accattatcgttggagtagtcctttacattatattgatacaccagatttcaaatgtaactatcaatattgcagtaagtaattcaattctttttccaataa |
35933782 |
T |
|
| Q |
129 |
cattatttcatatttagtctttgtttgctaaaaagttcctgataacagataagccagtgaattgaatttgtagtgtttggtaaaactagatcaaagagta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35933781 |
cattatttcatatttagtctttgtttgctaaaaagttcctgataacagataagctagtgaattgaatttgtagtgtttggtaaaactagatcaaagagta |
35933682 |
T |
|
| Q |
229 |
aa |
230 |
Q |
| |
|
|| |
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|
| T |
35933681 |
aa |
35933680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 35933649 - 35933617
Alignment:
| Q |
226 |
gtaaaattggcaaataaagccttagatttctta |
258 |
Q |
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||||||||||||||||||||||||||| ||||| |
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|
| T |
35933649 |
gtaaaattggcaaataaagccttagatctctta |
35933617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 218
Target Start/End: Complemental strand, 35682704 - 35682675
Alignment:
| Q |
189 |
attgaatttgtagtgtttggtaaaactaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
35682704 |
attgaatttgtagtgtttggtaaaactaga |
35682675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 28870940 - 28870903
Alignment:
| Q |
176 |
gataagccagtgaattgaatttgtagtgtttggtaaaa |
213 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
28870940 |
gataagctagtgaattgattttgtagtgtttggtaaaa |
28870903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 42747770 - 42747733
Alignment:
| Q |
176 |
gataagccagtgaattgaatttgtagtgtttggtaaaa |
213 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
42747770 |
gataagctagttaattgaatttgtagtgtttggtaaaa |
42747733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 31795354 - 31795382
Alignment:
| Q |
188 |
aattgaatttgtagtgtttggtaaaacta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
31795354 |
aattgaatttgtagtgtttggtaaaacta |
31795382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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