View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_116 (Length: 254)
Name: NF0836_high_116
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_116 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: scaffold0246 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 33 - 252
Target Start/End: Complemental strand, 13875 - 13656
Alignment:
| Q |
33 |
agaaccaacatcagaggcggaagtatgaaaatgatcctattatttgcatccgtcacaccaaacttaaccattgatccttcagtgaacttacgtgctttgc |
132 |
Q |
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| T |
13875 |
agaaccaacatcagaggcggaagtatgaaaatgatcctattatttgcatccgtcacaccaaacttaaccattgatcctttagtgaacttacgtgctttgc |
13776 |
T |
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| Q |
133 |
aaatttgtttccactgcccataaatgatgcacggaagatccttgccattactgaacttcatgttacattttcagctataccccaagtaatcaactatcgt |
232 |
Q |
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| T |
13775 |
aaatttgtttccactgcccataaatgatgtacggaagatccttgccattactgaacttcatgttacatttccagctataccgcaagtaatcaactatcgg |
13676 |
T |
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| Q |
233 |
ccgttcggtcgcttcagcag |
252 |
Q |
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| T |
13675 |
cagttcggtcgcttcagcag |
13656 |
T |
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