View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_high_117 (Length: 251)
Name: NF0836_high_117
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_117 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 55244869 - 55245121
Alignment:
| Q |
1 |
agctagttagtttgtacttgtacttggccaccataataaatagtacaacaaacattgcctgcaactgagaaattaataataaaattggagtcgaaaagcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55244869 |
agctagttagtttgtacttgtacttggccaacataataaatagtacaacaaacattgcctgcaactgagaaattaaacataaaattggagtcgaaaagcc |
55244968 |
T |
|
| Q |
101 |
aaagcacaagatgattgatgtgatatatagctgaaggtgatgtaaac-aagtaagagaaaaaggtgaaggttgagatcagatgaatttatcaatgaaatg |
199 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
55244969 |
aaagcacaagatgattgatgtcatatatagctgaaggtgatgtaaacaaagtaagagaaaaaggtgaaggttgagatgagatgaatttatgaatgaaata |
55245068 |
T |
|
| Q |
200 |
aaata-tggtaagcagaaaaagtaatgaaaccctcgtttcatctcactcgacc |
251 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
55245069 |
tggtagtcccaagcagaaaaagtaatgaaaccctcgtttcgtttcacttgacc |
55245121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 20 times since January 2019
Visitors: 6041