View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_high_118 (Length: 251)
Name: NF0836_high_118
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_118 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 55244691 - 55244455
Alignment:
| Q |
1 |
tttggatacatttatgtaaaaataagttgaagaataaatttgaatattcaagttaattgtataataaataccatcaaatatattcctaaaggcaaaatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55244691 |
tttggatacatttatgtaaaaataagttgaagaataaatttaagtattcaagttaattgtataataaataccatcaaatatattcctaaaggcaaaatcg |
55244592 |
T |
|
| Q |
101 |
acaatagaacatgtcata---------------gccaagtgtatgtttgaactatacttggtttgttaaactcaaaacttttgtccaaatttcatctcaa |
185 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55244591 |
acaatacaacatgtcataatcaaacatgtcatagccaagtgtatgtttgaactatacttggttttttaaactcaaaacttttgtccaaatttcatctcaa |
55244492 |
T |
|
| Q |
186 |
ttcaactcaaacacgaacttgtttgaagagttgtaac |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55244491 |
ttcaactcaaacacgaacttgtttgaagagttgtaac |
55244455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1514442 - 1514401
Alignment:
| Q |
1 |
tttggatacatttatgtaaaaataagttgaagaataaatttg |
42 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||||||| |
|
|
| T |
1514442 |
tttggatacattcatgtaaaaatgagttgaacaataaatttg |
1514401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34620985 - 34620945
Alignment:
| Q |
1 |
tttggatacatttatgtaaaaataagttgaagaataaattt |
41 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
34620985 |
tttggatacatttatgtaaaagtgagttgaaaaataaattt |
34620945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34748422 - 34748382
Alignment:
| Q |
1 |
tttggatacatttatgtaaaaataagttgaagaataaattt |
41 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
34748422 |
tttggatacatttatgtaaaagtgagttgaaaaataaattt |
34748382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7297110 - 7297066
Alignment:
| Q |
1 |
tttggatacatttatgtaaaaataagttgaagaataaatttgaat |
45 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
7297110 |
tttgaatacatatatgtaaaagtaagttgaacaataaatttgaat |
7297066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 126 times since January 2019
Visitors: 6050