View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_high_120 (Length: 251)
Name: NF0836_high_120
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_120 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 28346957 - 28346759
Alignment:
| Q |
1 |
atgcagttggctaaattggcttgacacatatgagactaacgttgttttgtgttgttgaacatcacaagaagagacaaagccagagtttatgtttaggggg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28346957 |
atgcatttggctaaattggcttgacacatatgagactaatgttgttttgtgttgttgaacatcacaagaagagacaaagccagagtttatgtttaggggg |
28346858 |
T |
|
| Q |
101 |
acaagtgaaaaagtatgatttattaaagaaaaatacatttccaacggtacacaccatataatcaagaagtttaagaaataataagatatattaatttta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28346857 |
acaagtgaaaaagtatgatttattaaagaaaaatacatttccaacggcacacaccatataatcaagaagtttaagaaataataagatatattaatttta |
28346759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 28346393 - 28346342
Alignment:
| Q |
191 |
ttaattttaataccgttaaacaaatataaaaagaaattacttttacctatga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28346393 |
ttaattttaataccgttaaacaaatataaaaagaaattacttttacctatga |
28346342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 198 times since January 2019
Visitors: 6046