View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_high_122 (Length: 250)

Name: NF0836_high_122
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_high_122
NF0836_high_122
[»] chr2 (33 HSPs)
chr2 (1-250)||(9321019-9321268)
chr2 (1-250)||(9328636-9328888)
chr2 (1-248)||(9274560-9274807)
chr2 (1-248)||(10335883-10336133)
chr2 (4-250)||(10347822-10348080)
chr2 (4-248)||(9065433-9065696)
chr2 (110-248)||(9061103-9061244)
chr2 (123-248)||(10371897-10372025)
chr2 (131-248)||(9291976-9292096)
chr2 (12-247)||(16269129-16269367)
chr2 (110-248)||(8573467-8573608)
chr2 (122-248)||(12006092-12006221)
chr2 (178-248)||(9284223-9284293)
chr2 (123-244)||(11987465-11987586)
chr2 (1-100)||(9060973-9061072)
chr2 (119-248)||(9316058-9316184)
chr2 (119-248)||(9364667-9364799)
chr2 (190-248)||(10353148-10353206)
chr2 (123-248)||(12012521-12012649)
chr2 (194-248)||(12018937-12018991)
chr2 (1-102)||(8573337-8573438)
chr2 (42-102)||(9316219-9316279)
chr2 (192-247)||(7115689-7115744)
chr2 (178-239)||(17566116-17566177)
chr2 (180-248)||(8579522-8579590)
chr2 (1-101)||(12018720-12018820)
chr2 (190-248)||(7611978-7612036)
chr2 (47-105)||(10353303-10353361)
chr2 (4-105)||(7115480-7115581)
chr2 (42-102)||(9292122-9292182)
chr2 (4-107)||(9284031-9284134)
chr2 (47-105)||(12012430-12012488)
chr2 (48-101)||(11987372-11987425)
[»] scaffold0667 (1 HSPs)
scaffold0667 (4-250)||(4508-4772)
[»] chr8 (1 HSPs)
chr8 (1-248)||(41966561-41966808)
[»] chr3 (2 HSPs)
chr3 (114-248)||(37462528-37462668)
chr3 (190-248)||(39427682-39427740)
[»] chr1 (6 HSPs)
chr1 (1-248)||(29467627-29467883)
chr1 (49-248)||(29423304-29423512)
chr1 (119-248)||(29453275-29453407)
chr1 (190-248)||(29443366-29443424)
chr1 (49-103)||(29453199-29453253)
chr1 (50-103)||(29443217-29443270)
[»] chr7 (3 HSPs)
chr7 (191-248)||(45230471-45230528)
chr7 (190-248)||(45237989-45238047)
chr7 (190-248)||(45243738-45243796)
[»] chr4 (2 HSPs)
chr4 (121-248)||(26574900-26575030)
chr4 (178-236)||(561273-561331)
[»] chr5 (1 HSPs)
chr5 (190-248)||(36224457-36224515)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 9321268 - 9321019
Alignment:
1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9321268 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 9321169  T
101 tgatgttgataatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgacttattacgaaactacaaaagttgatgtttgg 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9321168 tgatgttcataatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgacttattacgaaactacaaaagttgatgtttgg 9321069  T
201 gtgatgaaagaatatggttctagagatagttggtgtaaactttttactat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
9321068 gtgatgaaagaatatggttctagagatagttggtgtaaactttttactat 9321019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 9328888 - 9328636
Alignment:
1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
9328888 ctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaattttcaatgtggttcctcttcc 9328789  T
101 tgatgttgataatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtt 197  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||  || ||||||||    
9328788 tgatgttgataatagtaataagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactttgaattatgaaactactgaaattgatgtt 9328689  T
198 tgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactat 250  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
9328688 tgggtgatgaaacaatatggatatagagatagttggtgtaaactttttactat 9328636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9274807 - 9274560
Alignment:
1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||| ||||||| | | || ||| ||  | ||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
9274807 ctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgatattttcaatgtggttcctcttcc 9274708  T
101 tgatgttgataatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---atta-cgaaactacaaaagttgatgt 196  Q
    ||| |  |  ||||||   ||||||||||||||| |||||| |||||||| |||||||||||| |||||||   |||| ||||| |||  || |||| ||    
9274707 tgaagaagtcaatagt---gagagttttgaaattaatgttgttgttttggaagggtgtctttgtatgactttgaattatcgaaa-tactgaatttgaagt 9274612  T
197 ttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
9274611 ttgggtgatgaaagaatatggttctacagatagttggtgtaaactttttact 9274560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10336133 - 10335883
Alignment:
1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    |||||||||||||||||||   |||||||| ||| ||||| |||| |||||||| ||| ||||| ||| ||||||| |||||||||| ||||||||||||    
10336133 ctcttcactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgagattttcaatgaggttcctcttcc 10336034  T
101 tgatgttgataa-tagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactacaaaagttgatgt 196  Q
    |||||   |||| |||||||||||||||| |||||  | ||| |||||||||||||||||||||  || ||    ||||  ||||||| ||| |||||||    
10336033 tgatg-aaataattagtaatgagagttttaaaatttctattgctgttttgggagggtgtctttgtttgcctgtgaattatcaaactactaaaattgatgt 10335935  T
197 ttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    ||||||||||||||||||||| | |||||||||||||||||||| |||||||    
10335934 ttgggtgatgaaagaatatggctgtagagatagttggtgtaaacattttact 10335883  T

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Target: chr2; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 10348080 - 10347822
Alignment:
4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||||||| ||||| |||||||||| ||| |||||||||||||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||    
10348080 ttcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaattttcaatgaggttcctcttcctga 10347981  T
104 tg---ttgataa------tagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactacaaaagtt 191  Q
    ||   | | | |      || |  ||||||||||||| || |||||| ||||||||||||||||||||| || |||    ||||  ||  ||| ||| ||    
10347980 tgaaataggtgaagaagttaatggtgagagttttgaagttcatgttgctgttttgggagggtgtctttgtatcactgtcgattataaagatactaaaatt 10347881  T
192 gatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactat 250  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
10347880 gatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaactttttactat 10347822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 9065433 - 9065696
Alignment:
4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaat-gtggttcctcttcctg 102  Q
    |||||| ||||||||| |||||||| | | | |||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| |||||||    
9065433 ttcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaaattttcaattgaggttccccttcctg 9065532  T
103 atgt---------tga------taatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactac 184  Q
     ||          |||      ||||||||||||||||||| ||||   ||||| ||||||||||||||||||||| |||| ||   |||| ||||||||    
9065533 ctgaaataagaggtgaagaggttaatagtaatgagagttttcaaatgactgttgctgttttgggagggtgtctttgtatgattttgaattatgaaactac 9065632  T
185 aaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
     ||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
9065633 taatattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttact 9065696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 110 - 248
Target Start/End: Original strand, 9061103 - 9061244
Alignment:
110 taatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatg 206  Q
    ||||||||||| ||||||| |||||  ||||| ||||||||| ||||||||||||||| ||    |||| ||| |||| ||| |||||||||||||||||    
9061103 taatagtaatgggagttttaaaattcgtgttgctgttttgggtgggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatg 9061202  T
207 aaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
9061203 aaagactatggatctagagatagttggtgtaaactttttact 9061244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 10372025 - 10371897
Alignment:
123 agttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggtt 219  Q
    ||||||||||||  ||||| |||||| |||||||||||||| ||||||    ||||  ||||||| || |||||| ||||||||||||||||||||||||    
10372025 agttttgaaattcgtgttgctgttttaggagggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 10371926  T
220 ctagagatagttggtgtaaactttttact 248  Q
    |||||||||||||||||||||||||||||    
10371925 ctagagatagttggtgtaaactttttact 10371897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 9292096 - 9291976
Alignment:
131 aattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagat 227  Q
    ||||| ||||| |||||| |||| ||||||||| ||||||    |||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||    
9292096 aattgctgttgctgttttaggagagtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagat 9291997  T
228 agttggtgtaaactttttact 248  Q
    |||||||||||||||||||||    
9291996 agttggtgtaaactttttact 9291976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 16269367 - 16269129
Alignment:
12 ataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgt-tgat 110  Q
    |||||| | ||||||||||  || ||||||||||||||||| || || ||||||||||||||||| |||||||| | |||||||||||||| ||  | |     
16269367 ataatggcgaagaaacttgacgggttacatccttctttaatcgtcgcgtttaacctaacacttgagattttcaacgaggttcctcttcctgctgaattac 16269268  T
111 aatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatga 207  Q
    ||  || |   ||||||   ||| ||||||| |||||||||||| |||||||| || |||    |||| |||||||| ||| ||||||||||||||||||    
16269267 aag-gtgaaacgagtttgttaatcgatgttgctgttttgggaggatgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatga 16269169  T
208 aagaatatggttctagagatagttggtgtaaactttttac 247  Q
    |||| ||||| | ||||||||||||||| |||||||||||    
16269168 aagagtatggatatagagatagttggtgcaaactttttac 16269129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 248
Target Start/End: Original strand, 8573467 - 8573608
Alignment:
110 taatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatg 206  Q
    ||||||||||| ||||||| || ||  | ||| ||||||||| ||||||||||| ||| ||    |||| ||||| ||  || |||||||||||||||||    
8573467 taatagtaatgggagttttaaatttcgtcttgctgttttgggtgggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatg 8573566  T
207 aaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
8573567 aaagaatatggttctagagatagttggtgtaaactttttact 8573608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 248
Target Start/End: Original strand, 12006092 - 12006221
Alignment:
122 gagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggt 218  Q
    ||||||||||||| |||||| || ||||||||||||||||||  ||| |    ||||  ||||||| ||  ||||||| |||||||||||||||||||||    
12006092 gagttttgaaattaatgttgctgatttgggagggtgtctttgtttgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggt 12006191  T
219 tctagagatagttggtgtaaactttttact 248  Q
    | || |||||||||||||||||||||||||    
12006192 tgtaaagatagttggtgtaaactttttact 12006221  T

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Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 9284223 - 9284293
Alignment:
178 aaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
9284223 aaactactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaaatttttact 9284293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 11987465 - 11987586
Alignment:
123 agttttgaaattgatgttgatgttttgggagggtgtctttgcatgacttattacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttcta 222  Q
    ||||||||||||||||||| |||||||||||||||||||||  |||||    |  |   ||| ||  ||||| |||||||||||||||||||||| | ||    
11987465 agttttgaaattgatgttgctgttttgggagggtgtctttgtttgactgtgaatcatcatactaagattgatatttgggtgatgaaagaatatggatgta 11987564  T
223 gagatagttggtgtaaactttt 244  Q
    ||||||||||||||||||||||    
11987565 gagatagttggtgtaaactttt 11987586  T

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Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9060973 - 9061072
Alignment:
1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||| | ||| | |||||||||| ||| | | ||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
9060973 ctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaaattttcaatgaggttcctcttcc 9061072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 9316184 - 9316058
Alignment:
119 tgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatat 215  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||| |||| ||   ||||  ||||||| |||  ||||||||||||||||||||| |||    
9316184 tgagagttttcaaattgctgttgctgttttgggagggtgtctttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactat 9316085  T
216 ggttctagagatagttggtgtaaactttttact 248  Q
    || ||      ||||||||||||||||||||||    
9316084 ggatc------tagttggtgtaaactttttact 9316058  T

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Target: chr2; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 9364799 - 9364667
Alignment:
119 tgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatat 215  Q
    ||||||||||||||| |||||||  |||||||||||||||||| | |||| |    ||||  |||||||  || ||||||||||||||||||||||||||    
9364799 tgagagttttgaaatcgatgttgcggttttgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatat 9364700  T
216 ggttctagagatagttggtgtaaactttttact 248  Q
    || |  | |||||||||||||||| | ||||||    
9364699 ggattaaaagatagttggtgtaaattgtttact 9364667  T

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Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 10353206 - 10353148
Alignment:
190 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||    
10353206 ttgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaactttttact 10353148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 12012521 - 12012649
Alignment:
123 agttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggtt 219  Q
    ||||||||||||  ||||| || |||||||||||||||||| |||| |    || |  ||||||| ||  ||||||| | ||||||||||||||||||||    
12012521 agttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggtt 12012620  T
220 ctagagatagttggtgtaaactttttact 248  Q
     || |||||||||||||||||||||||||    
12012621 gtaaagatagttggtgtaaactttttact 12012649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 12018937 - 12018991
Alignment:
194 tgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
12018937 tgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttact 12018991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8573337 - 8573438
Alignment:
1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||| | ||| | |||||||||| ||| | | ||||||  |||||||| ||||||||||| ||||||||||||||| | | ||||||||||||    
8573337 ctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaaattttctacgaggttcctcttcc 8573436  T
101 tg 102  Q
    ||    
8573437 tg 8573438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 9316279 - 9316219
Alignment:
42 ccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctg 102  Q
    |||| ||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||    
9316279 ccttgtttcattgtcgcgtttaacctaacacttgagattttcaatgtggttcctcttcctg 9316219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 7115689 - 7115744
Alignment:
192 gatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttac 247  Q
    |||||||||||||||||| ||||||| |||||||| || |||||||||||||||||    
7115689 gatgtttgggtgatgaaacaatatggatctagagacagctggtgtaaactttttac 7115744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 17566116 - 17566177
Alignment:
178 aaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 239  Q
    ||||||| || ||||||||||||||||| ||||||||||| | |||||||| ||||||||||    
17566116 aaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaa 17566177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 8579522 - 8579590
Alignment:
180 actacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    ||||| || ||||| ||||||||||||||| ||||||| | ||||||||||||||||||| | ||||||    
8579522 actactaaggttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttact 8579590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12018720 - 12018820
Alignment:
1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||| ||||||||||||| |||| ||| |   || || ||||  |||||||| ||||||||||| ||||| || |||||||||| ||||||||||||    
12018720 ctcttcattggataatgacaaggaaatttgataactttcaacctttgttaattgtcgcatttaacctcacactcgatattttcaatgaggttcctcttcc 12018819  T
101 t 101  Q
    |    
12018820 t 12018820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 7612036 - 7611978
Alignment:
190 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    |||||||||||||||||||||||||||| |  | |||||||||||||||| | ||||||    
7612036 ttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttact 7611978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 10353361 - 10353303
Alignment:
47 tttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatg 105  Q
    ||||||| | || ||||||||||||||||| | |||||||| |||||||||||||||||    
10353361 tttaattctcgcgtttaacctaacacttgagactttcaatgaggttcctcttcctgatg 10353303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 7115480 - 7115581
Alignment:
4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||||||||||| |   |||||||| ||  | ||| |||| ||||||||| || |||||||||||||||||   ||||| || |||||||||||||||    
7115480 ttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctcttcctga 7115579  T
104 tg 105  Q
    ||    
7115580 tg 7115581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 9292182 - 9292122
Alignment:
42 ccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctg 102  Q
    |||| ||| ||||| || ||||||||||||||||| | |||||||||||||||| ||||||    
9292182 ccttgtttcattgtcgcttttaacctaacacttgagactttcaatgtggttccttttcctg 9292122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 9284031 - 9284134
Alignment:
4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    ||||||||||||||  |||||| |||| ||| | | | | || ||||||||| || |||||||||||||| ||  ||||||| | ||||||||||||||     
9284031 ttcactggataatggaaaagaatcttgatgggtcagacctttgtttaattgtcgcgtttaacctaacactagaggttttcaaagaggttcctcttcctgc 9284130  T
104 tgtt 107  Q
    ||||    
9284131 tgtt 9284134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 12012430 - 12012488
Alignment:
47 tttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatg 105  Q
    ||||||||| || |||||||||||||||||  ||||||||| ||||||  |||||||||    
12012430 tttaattgtcgcgtttaacctaacacttgagcttttcaatgaggttccatttcctgatg 12012488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 11987372 - 11987425
Alignment:
48 ttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcct 101  Q
    |||||||| ||||||||||||||||| ||  ||||||||| ||||||| |||||    
11987372 ttaattgtcgcatttaacctaacactcgaggttttcaatgaggttccttttcct 11987425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 4772 - 4508
Alignment:
4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||||||||||| |||||||||||| ||| |||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||    
4772 ttcactggataatggcaaagaaacttgatgggttacatccttctctaattgtcgcttttaacctaacacttgaaattttcaatgaggttcctcttcctga 4673  T
104 ------tgttga---------taatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactaca 185  Q
           | |||         ||||   ||||| ||| ||||||||||||||| || ||||||||| |||||||| ||||||    |||| ||||||||     
4672 cgaaataggtgaagaagaggttaattcaaatgacagtgttgaaattgatgttgctgctttgggaggatgtctttgtatgactgtgaattatgaaactact 4573  T
186 aaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactat 250  Q
    ||| |||||||||||||||||||| ||||||| |  | |||||||||||||||||||||||||||    
4572 aaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaactttttactat 4508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 41966561 - 41966808
Alignment:
1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||||||||||| ||| |||||| ||||||||| |||| ||||||||| || ||||||||||||||||| ||||||||   ||||||||||||    
41966561 ctcttcactggataatgaccaaggaacttgatggattacacccttgtttaattgtcgcgtttaacctaacacttgagattttcaaccaggttcctcttcc 41966660  T
101 tgatgttgataata-gtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactacaaaagttgatgt 196  Q
    || ||     |||| || |  ||| ||||||||||  ||||  ||||||||||||||||||||| |||  |    ||||  ||||||   | ||||||||    
41966661 tgctg----aaataggtcaaaagaattttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagcgatgttgatgt 41966756  T
197 ttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||||||||    
41966757 ttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttact 41966808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 37462668 - 37462528
Alignment:
114 agtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact------tattacgaaactacaaaagttgatgtttgggtgatga 207  Q
    |||||| ||||||||| | ||||||||| |||||||||||| |||||||| ||||||      ||| |  ||||||| ||| ||||||||||||||||||    
37462668 agtaataagagttttggacttgatgttgctgttttgggaggctgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatga 37462569  T
208 aagaatatggttctagagatagttggtgtaaactttttact 248  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
37462568 aagaatatggatctagagatagttggtgtaaactttgtact 37462528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 39427740 - 39427682
Alignment:
190 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||||| | ||||||    
39427740 ttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttact 39427682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 29467627 - 29467883
Alignment:
1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||| ||||||||||  |||||||||| ||| |||||  ||| ||||||| | || ||||||||||  ||||| |||||||||| ||||||||||||    
29467627 ctcttcattggataatgaagaagaaacttgatgggttacaatcttgtttaattatcgcgtttaacctaaagcttgagattttcaatgaggttcctcttcc 29467726  T
101 tgatgttgataat--agtaa----tgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactacaaaagtt 191  Q
    |||  | | | ||  ||| |    |||||||||| ||||||||||||  |||||||||||||||||||   ||| |    ||||  ||||||  ||| ||    
29467727 tgaaataggttatgaagttaatgttgagagttttaaaattgatgttgcggttttgggagggtgtctttagttgattgtgaattatcaaactagtaaaatt 29467826  T
192 gatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    ||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||    
29467827 gatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaactttttact 29467883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 248
Target Start/End: Complemental strand, 29423512 - 29423304
Alignment:
49 taattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgttgataat------agtaatgagagttttgaaattgatgttga 142  Q
    |||||||||| ||||||||||||| ||| |||||||||| ||||||| |||||||  ||| | |       | || ||||||||||||||||| |||||     
29423512 taattgttgcgtttaacctaacacatgagattttcaatgaggttccttttcctgaaattggtgaagaagtgaatagtgagagttttgaaattggtgttgc 29423413  T
143 tgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 239  Q
     ||| ||| |||||| ||||| ||||||    ||||  |||||   ||| ||||||||||| |||||||||||||||| | ||||||||| |||||||||    
29423412 ggttctggaagggtgcctttgtatgactgtgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaa 29423313  T
240 ctttttact 248  Q
    |||||||||    
29423312 ctttttact 29423304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 248
Target Start/End: Original strand, 29453275 - 29453407
Alignment:
119 tgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatat 215  Q
    ||||||||||||||||| |||||  ||||||| |||||||||||| |||| |    ||||  |||||   ||| ||||||||||||||||||||||||||    
29453275 tgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatat 29453374  T
216 ggttctagagatagttggtgtaaactttttact 248  Q
    || | ||||||||| |||||| |||||||||||    
29453375 ggatgtagagatagctggtgtgaactttttact 29453407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 29443366 - 29443424
Alignment:
190 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||    
29443366 ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttact 29443424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 29453199 - 29453253
Alignment:
49 taattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||||||| |||||||||||||  || |||||||||| ||||||| |||||||    
29453199 taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctga 29453253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 29443217 - 29443270
Alignment:
50 aattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||| || |||||||||||||| || |||||||||| ||||||| |||||||    
29443217 aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga 29443270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 45230528 - 45230471
Alignment:
191 tgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45230528 tgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 45230471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 45238047 - 45237989
Alignment:
190 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
45238047 ttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttact 45237989  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 45243796 - 45243738
Alignment:
190 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
45243796 ttgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactttttact 45243738  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 26575030 - 26574900
Alignment:
121 agagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatgg 217  Q
    |||||||| |||||  ||||| || ||| |||||||||||||| ||||||    ||||  ||  ||| ||| ||||||||||||||||||||||||||||    
26575030 agagttttaaaattcgtgttgctgatttaggagggtgtctttgtatgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatgg 26574931  T
218 ttctagagatagttggtgtaaactttttact 248  Q
     | ||||||||||||||||||||||||||||    
26574930 atgtagagatagttggtgtaaactttttact 26574900  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 561331 - 561273
Alignment:
178 aaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgt 236  Q
    ||||||| || |||||||||||||| |||||||||||||| | ||||||||||||||||    
561331 aaactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggtgt 561273  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 36224515 - 36224457
Alignment:
190 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 248  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||| | ||||||    
36224515 ttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttact 36224457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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