View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_high_122 (Length: 250)
Name: NF0836_high_122
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0836_high_122 |
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[»] chr2 (33 HSPs) |
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[»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 33)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 9321268 - 9321019
Alignment:
Q |
1 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
100 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
9321268 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
9321169 |
T |
 |
Q |
101 |
tgatgttgataatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgacttattacgaaactacaaaagttgatgtttgg |
200 |
Q |
|
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
9321168 |
tgatgttcataatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgacttattacgaaactacaaaagttgatgtttgg |
9321069 |
T |
 |
Q |
201 |
gtgatgaaagaatatggttctagagatagttggtgtaaactttttactat |
250 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
9321068 |
gtgatgaaagaatatggttctagagatagttggtgtaaactttttactat |
9321019 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 9328888 - 9328636
Alignment:
Q |
1 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
100 |
Q |
|
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
9328888 |
ctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaattttcaatgtggttcctcttcc |
9328789 |
T |
 |
Q |
101 |
tgatgttgataatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtt |
197 |
Q |
|
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || |||||||| |
|
|
T |
9328788 |
tgatgttgataatagtaataagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactttgaattatgaaactactgaaattgatgtt |
9328689 |
T |
 |
Q |
198 |
tgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactat |
250 |
Q |
|
|
|||||||||||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
T |
9328688 |
tgggtgatgaaacaatatggatatagagatagttggtgtaaactttttactat |
9328636 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9274807 - 9274560
Alignment:
Q |
1 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
100 |
Q |
|
|
||||||||||| ||||||| | | || ||| || | ||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
9274807 |
ctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgatattttcaatgtggttcctcttcc |
9274708 |
T |
 |
Q |
101 |
tgatgttgataatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---atta-cgaaactacaaaagttgatgt |
196 |
Q |
|
|
||| | | |||||| ||||||||||||||| |||||| |||||||| |||||||||||| ||||||| |||| ||||| ||| || |||| || |
|
|
T |
9274707 |
tgaagaagtcaatagt---gagagttttgaaattaatgttgttgttttggaagggtgtctttgtatgactttgaattatcgaaa-tactgaatttgaagt |
9274612 |
T |
 |
Q |
197 |
ttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
T |
9274611 |
ttgggtgatgaaagaatatggttctacagatagttggtgtaaactttttact |
9274560 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10336133 - 10335883
Alignment:
Q |
1 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
100 |
Q |
|
|
||||||||||||||||||| |||||||| ||| ||||| |||| |||||||| ||| ||||| ||| ||||||| |||||||||| |||||||||||| |
|
|
T |
10336133 |
ctcttcactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgagattttcaatgaggttcctcttcc |
10336034 |
T |
 |
Q |
101 |
tgatgttgataa-tagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactacaaaagttgatgt |
196 |
Q |
|
|
||||| |||| |||||||||||||||| ||||| | ||| ||||||||||||||||||||| || || |||| ||||||| ||| ||||||| |
|
|
T |
10336033 |
tgatg-aaataattagtaatgagagttttaaaatttctattgctgttttgggagggtgtctttgtttgcctgtgaattatcaaactactaaaattgatgt |
10335935 |
T |
 |
Q |
197 |
ttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
||||||||||||||||||||| | |||||||||||||||||||| ||||||| |
|
|
T |
10335934 |
ttgggtgatgaaagaatatggctgtagagatagttggtgtaaacattttact |
10335883 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 10348080 - 10347822
Alignment:
Q |
4 |
ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga |
103 |
Q |
|
|
|||||||||| ||||| |||||||||| ||| |||||||||||||||||||| || |||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
T |
10348080 |
ttcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaattttcaatgaggttcctcttcctga |
10347981 |
T |
 |
Q |
104 |
tg---ttgataa------tagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactacaaaagtt |
191 |
Q |
|
|
|| | | | | || | ||||||||||||| || |||||| ||||||||||||||||||||| || ||| |||| || ||| ||| || |
|
|
T |
10347980 |
tgaaataggtgaagaagttaatggtgagagttttgaagttcatgttgctgttttgggagggtgtctttgtatcactgtcgattataaagatactaaaatt |
10347881 |
T |
 |
Q |
192 |
gatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactat |
250 |
Q |
|
|
||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
T |
10347880 |
gatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaactttttactat |
10347822 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 9065433 - 9065696
Alignment:
Q |
4 |
ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaat-gtggttcctcttcctg |
102 |
Q |
|
|
|||||| ||||||||| |||||||| | | | |||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||||| |
|
|
T |
9065433 |
ttcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaaattttcaattgaggttccccttcctg |
9065532 |
T |
 |
Q |
103 |
atgt---------tga------taatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactac |
184 |
Q |
|
|
|| ||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||| || |||| |||||||| |
|
|
T |
9065533 |
ctgaaataagaggtgaagaggttaatagtaatgagagttttcaaatgactgttgctgttttgggagggtgtctttgtatgattttgaattatgaaactac |
9065632 |
T |
 |
Q |
185 |
aaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
T |
9065633 |
taatattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttact |
9065696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 110 - 248
Target Start/End: Original strand, 9061103 - 9061244
Alignment:
Q |
110 |
taatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatg |
206 |
Q |
|
|
||||||||||| ||||||| ||||| ||||| ||||||||| ||||||||||||||| || |||| ||| |||| ||| ||||||||||||||||| |
|
|
T |
9061103 |
taatagtaatgggagttttaaaattcgtgttgctgttttgggtgggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatg |
9061202 |
T |
 |
Q |
207 |
aaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
||||| ||||| |||||||||||||||||||||||||||||| |
|
|
T |
9061203 |
aaagactatggatctagagatagttggtgtaaactttttact |
9061244 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 10372025 - 10371897
Alignment:
Q |
123 |
agttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggtt |
219 |
Q |
|
|
|||||||||||| ||||| |||||| |||||||||||||| |||||| |||| ||||||| || |||||| |||||||||||||||||||||||| |
|
|
T |
10372025 |
agttttgaaattcgtgttgctgttttaggagggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt |
10371926 |
T |
 |
Q |
220 |
ctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
10371925 |
ctagagatagttggtgtaaactttttact |
10371897 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 9292096 - 9291976
Alignment:
Q |
131 |
aattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagat |
227 |
Q |
|
|
||||| ||||| |||||| |||| ||||||||| |||||| |||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||| |
|
|
T |
9292096 |
aattgctgttgctgttttaggagagtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagat |
9291997 |
T |
 |
Q |
228 |
agttggtgtaaactttttact |
248 |
Q |
|
|
||||||||||||||||||||| |
|
|
T |
9291996 |
agttggtgtaaactttttact |
9291976 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 16269367 - 16269129
Alignment:
Q |
12 |
ataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgt-tgat |
110 |
Q |
|
|
|||||| | |||||||||| || ||||||||||||||||| || || ||||||||||||||||| |||||||| | |||||||||||||| || | | |
|
|
T |
16269367 |
ataatggcgaagaaacttgacgggttacatccttctttaatcgtcgcgtttaacctaacacttgagattttcaacgaggttcctcttcctgctgaattac |
16269268 |
T |
 |
Q |
111 |
aatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatga |
207 |
Q |
|
|
|| || | |||||| ||| ||||||| |||||||||||| |||||||| || ||| |||| |||||||| ||| |||||||||||||||||| |
|
|
T |
16269267 |
aag-gtgaaacgagtttgttaatcgatgttgctgttttgggaggatgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatga |
16269169 |
T |
 |
Q |
208 |
aagaatatggttctagagatagttggtgtaaactttttac |
247 |
Q |
|
|
|||| ||||| | ||||||||||||||| ||||||||||| |
|
|
T |
16269168 |
aagagtatggatatagagatagttggtgcaaactttttac |
16269129 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 248
Target Start/End: Original strand, 8573467 - 8573608
Alignment:
Q |
110 |
taatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatg |
206 |
Q |
|
|
||||||||||| ||||||| || || | ||| ||||||||| ||||||||||| ||| || |||| ||||| || || ||||||||||||||||| |
|
|
T |
8573467 |
taatagtaatgggagttttaaatttcgtcttgctgttttgggtgggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatg |
8573566 |
T |
 |
Q |
207 |
aaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
8573567 |
aaagaatatggttctagagatagttggtgtaaactttttact |
8573608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 248
Target Start/End: Original strand, 12006092 - 12006221
Alignment:
Q |
122 |
gagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggt |
218 |
Q |
|
|
||||||||||||| |||||| || |||||||||||||||||| ||| | |||| ||||||| || ||||||| ||||||||||||||||||||| |
|
|
T |
12006092 |
gagttttgaaattaatgttgctgatttgggagggtgtctttgtttgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggt |
12006191 |
T |
 |
Q |
219 |
tctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
| || ||||||||||||||||||||||||| |
|
|
T |
12006192 |
tgtaaagatagttggtgtaaactttttact |
12006221 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 9284223 - 9284293
Alignment:
Q |
178 |
aaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
T |
9284223 |
aaactactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaaatttttact |
9284293 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 11987465 - 11987586
Alignment:
Q |
123 |
agttttgaaattgatgttgatgttttgggagggtgtctttgcatgacttattacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttcta |
222 |
Q |
|
|
||||||||||||||||||| ||||||||||||||||||||| ||||| | | ||| || ||||| |||||||||||||||||||||| | || |
|
|
T |
11987465 |
agttttgaaattgatgttgctgttttgggagggtgtctttgtttgactgtgaatcatcatactaagattgatatttgggtgatgaaagaatatggatgta |
11987564 |
T |
 |
Q |
223 |
gagatagttggtgtaaactttt |
244 |
Q |
|
|
|||||||||||||||||||||| |
|
|
T |
11987565 |
gagatagttggtgtaaactttt |
11987586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9060973 - 9061072
Alignment:
Q |
1 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
100 |
Q |
|
|
||||||||||| | ||| | |||||||||| ||| | | |||||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
T |
9060973 |
ctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaaattttcaatgaggttcctcttcc |
9061072 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 9316184 - 9316058
Alignment:
Q |
119 |
tgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatat |
215 |
Q |
|
|
|||||||||| |||||| ||||| ||||||||||||||||||||| |||| || |||| ||||||| ||| ||||||||||||||||||||| ||| |
|
|
T |
9316184 |
tgagagttttcaaattgctgttgctgttttgggagggtgtctttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactat |
9316085 |
T |
 |
Q |
216 |
ggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|| || |||||||||||||||||||||| |
|
|
T |
9316084 |
ggatc------tagttggtgtaaactttttact |
9316058 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 9364799 - 9364667
Alignment:
Q |
119 |
tgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatat |
215 |
Q |
|
|
||||||||||||||| ||||||| |||||||||||||||||| | |||| | |||| ||||||| || |||||||||||||||||||||||||| |
|
|
T |
9364799 |
tgagagttttgaaatcgatgttgcggttttgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatat |
9364700 |
T |
 |
Q |
216 |
ggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|| | | |||||||||||||||| | |||||| |
|
|
T |
9364699 |
ggattaaaagatagttggtgtaaattgtttact |
9364667 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 10353206 - 10353148
Alignment:
Q |
190 |
ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
T |
10353206 |
ttgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaactttttact |
10353148 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 12012521 - 12012649
Alignment:
Q |
123 |
agttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggtt |
219 |
Q |
|
|
|||||||||||| ||||| || |||||||||||||||||| |||| | || | ||||||| || ||||||| | |||||||||||||||||||| |
|
|
T |
12012521 |
agttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggtt |
12012620 |
T |
 |
Q |
220 |
ctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|| ||||||||||||||||||||||||| |
|
|
T |
12012621 |
gtaaagatagttggtgtaaactttttact |
12012649 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 12018937 - 12018991
Alignment:
Q |
194 |
tgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
T |
12018937 |
tgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttact |
12018991 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8573337 - 8573438
Alignment:
Q |
1 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
100 |
Q |
|
|
||||||||||| | ||| | |||||||||| ||| | | |||||| |||||||| ||||||||||| ||||||||||||||| | | |||||||||||| |
|
|
T |
8573337 |
ctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaaattttctacgaggttcctcttcc |
8573436 |
T |
 |
Q |
101 |
tg |
102 |
Q |
|
|
|| |
|
|
T |
8573437 |
tg |
8573438 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 9316279 - 9316219
Alignment:
Q |
42 |
ccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctg |
102 |
Q |
|
|
|||| ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
T |
9316279 |
ccttgtttcattgtcgcgtttaacctaacacttgagattttcaatgtggttcctcttcctg |
9316219 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 7115689 - 7115744
Alignment:
Q |
192 |
gatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttac |
247 |
Q |
|
|
|||||||||||||||||| ||||||| |||||||| || ||||||||||||||||| |
|
|
T |
7115689 |
gatgtttgggtgatgaaacaatatggatctagagacagctggtgtaaactttttac |
7115744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 17566116 - 17566177
Alignment:
Q |
178 |
aaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa |
239 |
Q |
|
|
||||||| || ||||||||||||||||| ||||||||||| | |||||||| |||||||||| |
|
|
T |
17566116 |
aaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaa |
17566177 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 8579522 - 8579590
Alignment:
Q |
180 |
actacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
||||| || ||||| ||||||||||||||| ||||||| | ||||||||||||||||||| | |||||| |
|
|
T |
8579522 |
actactaaggttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttact |
8579590 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12018720 - 12018820
Alignment:
Q |
1 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
100 |
Q |
|
|
||||||| ||||||||||||| |||| ||| | || || |||| |||||||| ||||||||||| ||||| || |||||||||| |||||||||||| |
|
|
T |
12018720 |
ctcttcattggataatgacaaggaaatttgataactttcaacctttgttaattgtcgcatttaacctcacactcgatattttcaatgaggttcctcttcc |
12018819 |
T |
 |
Q |
101 |
t |
101 |
Q |
|
|
| |
|
|
T |
12018820 |
t |
12018820 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 7612036 - 7611978
Alignment:
Q |
190 |
ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||||||| | | |||||||||||||||| | |||||| |
|
|
T |
7612036 |
ttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttact |
7611978 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 10353361 - 10353303
Alignment:
Q |
47 |
tttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatg |
105 |
Q |
|
|
||||||| | || ||||||||||||||||| | |||||||| ||||||||||||||||| |
|
|
T |
10353361 |
tttaattctcgcgtttaacctaacacttgagactttcaatgaggttcctcttcctgatg |
10353303 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 7115480 - 7115581
Alignment:
Q |
4 |
ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga |
103 |
Q |
|
|
|||||||||||||| | |||||||| || | ||| |||| ||||||||| || ||||||||||||||||| ||||| || ||||||||||||||| |
|
|
T |
7115480 |
ttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctcttcctga |
7115579 |
T |
 |
Q |
104 |
tg |
105 |
Q |
|
|
|| |
|
|
T |
7115580 |
tg |
7115581 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 9292182 - 9292122
Alignment:
Q |
42 |
ccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctg |
102 |
Q |
|
|
|||| ||| ||||| || ||||||||||||||||| | |||||||||||||||| |||||| |
|
|
T |
9292182 |
ccttgtttcattgtcgcttttaacctaacacttgagactttcaatgtggttccttttcctg |
9292122 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 9284031 - 9284134
Alignment:
Q |
4 |
ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga |
103 |
Q |
|
|
|||||||||||||| |||||| |||| ||| | | | | || ||||||||| || |||||||||||||| || ||||||| | |||||||||||||| |
|
|
T |
9284031 |
ttcactggataatggaaaagaatcttgatgggtcagacctttgtttaattgtcgcgtttaacctaacactagaggttttcaaagaggttcctcttcctgc |
9284130 |
T |
 |
Q |
104 |
tgtt |
107 |
Q |
|
|
|||| |
|
|
T |
9284131 |
tgtt |
9284134 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 12012430 - 12012488
Alignment:
Q |
47 |
tttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatg |
105 |
Q |
|
|
||||||||| || ||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
T |
12012430 |
tttaattgtcgcgtttaacctaacacttgagcttttcaatgaggttccatttcctgatg |
12012488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 11987372 - 11987425
Alignment:
Q |
48 |
ttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcct |
101 |
Q |
|
|
|||||||| ||||||||||||||||| || ||||||||| ||||||| ||||| |
|
|
T |
11987372 |
ttaattgtcgcatttaacctaacactcgaggttttcaatgaggttccttttcct |
11987425 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 4772 - 4508
Alignment:
Q |
4 |
ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga |
103 |
Q |
|
|
|||||||||||||| |||||||||||| ||| |||||||||||| ||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
T |
4772 |
ttcactggataatggcaaagaaacttgatgggttacatccttctctaattgtcgcttttaacctaacacttgaaattttcaatgaggttcctcttcctga |
4673 |
T |
 |
Q |
104 |
------tgttga---------taatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactaca |
185 |
Q |
|
|
| ||| |||| ||||| ||| ||||||||||||||| || ||||||||| |||||||| |||||| |||| |||||||| |
|
|
T |
4672 |
cgaaataggtgaagaagaggttaattcaaatgacagtgttgaaattgatgttgctgctttgggaggatgtctttgtatgactgtgaattatgaaactact |
4573 |
T |
 |
Q |
186 |
aaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactat |
250 |
Q |
|
|
||| |||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||| |
|
|
T |
4572 |
aaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaactttttactat |
4508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 41966561 - 41966808
Alignment:
Q |
1 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
100 |
Q |
|
|
||||||||||||||||||| ||| |||||| ||||||||| |||| ||||||||| || ||||||||||||||||| |||||||| |||||||||||| |
|
|
T |
41966561 |
ctcttcactggataatgaccaaggaacttgatggattacacccttgtttaattgtcgcgtttaacctaacacttgagattttcaaccaggttcctcttcc |
41966660 |
T |
 |
Q |
101 |
tgatgttgataata-gtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactacaaaagttgatgt |
196 |
Q |
|
|
|| || |||| || | ||| |||||||||| |||| ||||||||||||||||||||| ||| | |||| |||||| | |||||||| |
|
|
T |
41966661 |
tgctg----aaataggtcaaaagaattttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagcgatgttgatgt |
41966756 |
T |
 |
Q |
197 |
ttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
|
|
T |
41966757 |
ttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttact |
41966808 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 37462668 - 37462528
Alignment:
Q |
114 |
agtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact------tattacgaaactacaaaagttgatgtttgggtgatga |
207 |
Q |
|
|
|||||| ||||||||| | ||||||||| |||||||||||| |||||||| |||||| ||| | ||||||| ||| |||||||||||||||||| |
|
|
T |
37462668 |
agtaataagagttttggacttgatgttgctgttttgggaggctgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatga |
37462569 |
T |
 |
Q |
208 |
aagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||| ||||||||||||||||||||||||| |||| |
|
|
T |
37462568 |
aagaatatggatctagagatagttggtgtaaactttgtact |
37462528 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 39427740 - 39427682
Alignment:
Q |
190 |
ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||||||| | |||| |||||||||||||| | |||||| |
|
|
T |
39427740 |
ttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttact |
39427682 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 29467627 - 29467883
Alignment:
Q |
1 |
ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc |
100 |
Q |
|
|
||||||| |||||||||| |||||||||| ||| ||||| ||| ||||||| | || |||||||||| ||||| |||||||||| |||||||||||| |
|
|
T |
29467627 |
ctcttcattggataatgaagaagaaacttgatgggttacaatcttgtttaattatcgcgtttaacctaaagcttgagattttcaatgaggttcctcttcc |
29467726 |
T |
 |
Q |
101 |
tgatgttgataat--agtaa----tgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgact---tattacgaaactacaaaagtt |
191 |
Q |
|
|
||| | | | || ||| | |||||||||| |||||||||||| ||||||||||||||||||| ||| | |||| |||||| ||| || |
|
|
T |
29467727 |
tgaaataggttatgaagttaatgttgagagttttaaaattgatgttgcggttttgggagggtgtctttagttgattgtgaattatcaaactagtaaaatt |
29467826 |
T |
 |
Q |
192 |
gatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||| |
|
|
T |
29467827 |
gatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaactttttact |
29467883 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 248
Target Start/End: Complemental strand, 29423512 - 29423304
Alignment:
Q |
49 |
taattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgttgataat------agtaatgagagttttgaaattgatgttga |
142 |
Q |
|
|
|||||||||| ||||||||||||| ||| |||||||||| ||||||| ||||||| ||| | | | || ||||||||||||||||| ||||| |
|
|
T |
29423512 |
taattgttgcgtttaacctaacacatgagattttcaatgaggttccttttcctgaaattggtgaagaagtgaatagtgagagttttgaaattggtgttgc |
29423413 |
T |
 |
Q |
143 |
tgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa |
239 |
Q |
|
|
||| ||| |||||| ||||| |||||| |||| ||||| ||| ||||||||||| |||||||||||||||| | ||||||||| ||||||||| |
|
|
T |
29423412 |
ggttctggaagggtgcctttgtatgactgtgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaa |
29423313 |
T |
 |
Q |
240 |
ctttttact |
248 |
Q |
|
|
||||||||| |
|
|
T |
29423312 |
ctttttact |
29423304 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 248
Target Start/End: Original strand, 29453275 - 29453407
Alignment:
Q |
119 |
tgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatat |
215 |
Q |
|
|
||||||||||||||||| ||||| ||||||| |||||||||||| |||| | |||| ||||| ||| |||||||||||||||||||||||||| |
|
|
T |
29453275 |
tgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatat |
29453374 |
T |
 |
Q |
216 |
ggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|| | ||||||||| |||||| ||||||||||| |
|
|
T |
29453375 |
ggatgtagagatagctggtgtgaactttttact |
29453407 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 29443366 - 29443424
Alignment:
Q |
190 |
ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| |
|
|
T |
29443366 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttact |
29443424 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 29453199 - 29453253
Alignment:
Q |
49 |
taattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga |
103 |
Q |
|
|
|||||||||| ||||||||||||| || |||||||||| ||||||| ||||||| |
|
|
T |
29453199 |
taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctga |
29453253 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 29443217 - 29443270
Alignment:
Q |
50 |
aattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga |
103 |
Q |
|
|
|||||| || |||||||||||||| || |||||||||| ||||||| ||||||| |
|
|
T |
29443217 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga |
29443270 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 45230528 - 45230471
Alignment:
Q |
191 |
tgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
45230528 |
tgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
45230471 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 45238047 - 45237989
Alignment:
Q |
190 |
ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
T |
45238047 |
ttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttact |
45237989 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 45243796 - 45243738
Alignment:
Q |
190 |
ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
T |
45243796 |
ttgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactttttact |
45243738 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 26575030 - 26574900
Alignment:
Q |
121 |
agagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatgg |
217 |
Q |
|
|
|||||||| ||||| ||||| || ||| |||||||||||||| |||||| |||| || ||| ||| |||||||||||||||||||||||||||| |
|
|
T |
26575030 |
agagttttaaaattcgtgttgctgatttaggagggtgtctttgtatgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatgg |
26574931 |
T |
 |
Q |
218 |
ttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
| |||||||||||||||||||||||||||| |
|
|
T |
26574930 |
atgtagagatagttggtgtaaactttttact |
26574900 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 561331 - 561273
Alignment:
Q |
178 |
aaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgt |
236 |
Q |
|
|
||||||| || |||||||||||||| |||||||||||||| | |||||||||||||||| |
|
|
T |
561331 |
aaactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggtgt |
561273 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 36224515 - 36224457
Alignment:
Q |
190 |
ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
248 |
Q |
|
|
|||||||||||||||||||||||||||| | ||||||||||||||||||| | |||||| |
|
|
T |
36224515 |
ttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttact |
36224457 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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