View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_high_13 (Length: 650)

Name: NF0836_high_13
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_high_13
NF0836_high_13
[»] chr3 (9 HSPs)
chr3 (375-640)||(55086775-55087040)
chr3 (175-539)||(38041835-38042200)
chr3 (175-477)||(50906767-50907071)
chr3 (180-447)||(38032182-38032450)
chr3 (179-447)||(38038446-38038715)
chr3 (180-447)||(38027355-38027623)
chr3 (202-447)||(50913418-50913664)
chr3 (179-447)||(38034954-38035223)
chr3 (175-409)||(55082716-55082933)
[»] chr8 (1 HSPs)
chr8 (180-447)||(21608157-21608425)
[»] chr2 (2 HSPs)
chr2 (54-260)||(3072139-3072347)
chr2 (452-532)||(3072391-3072471)
[»] chr4 (2 HSPs)
chr4 (281-369)||(27526162-27526250)
chr4 (284-366)||(27431201-27431283)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 375 - 640
Target Start/End: Original strand, 55086775 - 55087040
Alignment:
Q  375 aattcagttactgtcatccaatgggtggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttcctgcttgaacgacctatgattaaattc 474  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  55086775 aattcagttactgtcatccaatgggtggtcttacaattagctgcaaagaagatgtatttttacatacaacttcctgcttgaatggcctatgattaaattc 55086874  T
Q  475 atattgcaaaaaagtcatatgaacaatagcattagacagtaggattgactagttgagacgactttggcgcataaaagtgcatgttagctaaaagtcgaac 574  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| || |||    
T  55086875 atattgcaaaaaagtcatatgaacaatagcattagacagtacgattgactagttgagacaactttggtgcataaaagtgcatgttagctaaaattcaaac 55086974  T
Q  575 ctaaacatacaaaatcataacagaagtcaaataatcatctcaattccttactgaaagaaattcatc 640  Q
    ||||||||||| || ||||||| ||||||||||| ||||||||||||||| || ||||||||||||    
T  55086975 ctaaacatacataaacataacataagtcaaataaccatctcaattccttaatgcaagaaattcatc 55087040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 175 - 539
Target Start/End: Original strand, 38041835 - 38042200
Alignment:
Q  175 gaaacaaaacaataatgggttttcgcttacctggtacgagacgattatcatttagtgcaagtcgatcatctagcaaacaagtggaaataccaaatg-cta 273  Q
    |||||||||||| |||||||||||||||||||||||  ||||||| |||||||| |||| |||  ||||| ||||||||| ||||| | ||||| | |||    
T  38041835 gaaacaaaacaagaatgggttttcgcttacctggtattagacgatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggcta 38041934  T
Q  274 ttttgtggtgtatgttggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctgaaaag 373  Q
    ||| | |||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||||| ||    
T  38041935 tttagcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagag 38042034  T
Q  374 gaattcagttactgtcatccaatgggtggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttcctgcttgaacgacctatgattaaatt 473  Q
    |||||| |||||||||||| |||||||||||||||||||   ||||| |||||||||||||||| |||||||||| ||||||||| ||||| ||||||||    
T  38042035 gaattcggttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacgtacaacttcccgcttgaacggcctataattaaatt 38042134  T
Q  474 catattgcaaaaaagtcatatgaacaatagcattagacagtaggattgactagttgagacgacttt 539  Q
    | ||  ||||||||||||||||| | ||| |||   |||||||||||||||||||| ||| |||||    
T  38042135 cttacggcaaaaaagtcatatgatcgataacatcgcacagtaggattgactagttgtgacaacttt 38042200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 175 - 477
Target Start/End: Complemental strand, 50907071 - 50906767
Alignment:
Q  175 gaaacaaaacaataatgggttttcgcttacctggtacgagacgattatcatttagtgcaagtcgatcatctagcaaacaagtggaaataccaaatg-cta 273  Q
    |||||||||||| |||||||||||||||||||||||  ||||  | ||||||||||||||||| ||| |||||||||||||||||  | ||||| | |||    
T  50907071 gaaacaaaacaagaatgggttttcgcttacctggtattagacagtcatcatttagtgcaagtcaatcgtctagcaaacaagtggacgtcccaaaaggcta 50906972  T
Q  274 ttttgtggtgtatgtt-ggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctgaaaa 372  Q
    ||||| |||||||||| ||||||||||   |||||||||||| |||||| |||| |||||||||||||| |||||||||||||||| ||||||| ||| |    
T  50906971 ttttgcggtgtatgttaggagaggaaaatgagaggtttttgattccagtgtcattcttgaatgagccttcatttcaagaattgttgcgtcaagccgaaga 50906872  T
Q  373 ggaattcagttactgtcatccaatgggtggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttcctgcttgaacgacctatgattaaat 472  Q
    ||||||| ||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||| ||||||||| ||||| | |||||    
T  50906871 ggaattccgttactgtcatccaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttcccgcttgaacggcctataaataaat 50906772  T
Q  473 tcata 477  Q
    |||||    
T  50906771 tcata 50906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 180 - 447
Target Start/End: Original strand, 38032182 - 38032450
Alignment:
Q  180 aaaacaataatgggttttcgcttacctggtacgagacgattatcatttagtgcaagtcgatcatctagcaaacaagtggaaataccaaatg-ctattttg 278  Q
    ||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||| ||||||||||||| | ||||| | |||| |||    
T  38032182 aaaacaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctatcaaacaagtggaagttccaaaaggctatcttg 38032281  T
Q  279 tggtgtatgttggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctgaaaaggaatt 378  Q
      ||||||||||||||| ||||||  |||||| ||| ||||||||||| |||||||||||||||||||||||||||| | || ||| ||||| |||||||    
T  38032282 cagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaattgcttagccaatctgaagaggaatt 38032381  T
Q  379 cagttactgtcatccaatgggtggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttc 447  Q
    | |||| |||||||||||||| ||||||||||||  ||||||||||||  |||| ||||||||||||||    
T  38032382 cggttattgtcatccaatgggcggtcttacaattccctgcaaagaagacatgttcttacatacaacttc 38032450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 179 - 447
Target Start/End: Original strand, 38038446 - 38038715
Alignment:
Q  179 caaaacaataatgggttttcgcttacctggtacgagacgattatcatttagtgcaagtcgatcatctagcaaacaagtggaaataccaaatg-ctatttt 277  Q
    ||||| || |||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||| | | || ||    
T  38038446 caaaaaaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctagcaaacaagtggaagtcccaaaaggccatctt 38038545  T
Q  278 gtggtgtatgttggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctgaaaaggaat 377  Q
    |  ||||||||||||||| ||||||  |||||  ||| |||| |||||| |||||||||||||||||||||||||||| | || ||||||||| ||||||    
T  38038546 gcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaat 38038645  T
Q  378 tcagttactgtcatccaatgggtggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttc 447  Q
    || |||| |||||||||||||| ||||||||||||  |||||| |||||  |||| ||||||||| ||||    
T  38038646 tcggttattgtcatccaatgggaggtcttacaattccctgcaaggaagacatgttcttacatacagcttc 38038715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 180 - 447
Target Start/End: Original strand, 38027355 - 38027623
Alignment:
Q  180 aaaacaataatgggttttcgcttacctggtacgagacgattatcatttagtgcaagtcgatcatctagcaaacaagtggaaataccaaatg-ctattttg 278  Q
    ||||||| |||||||||||||||||||| ||  ||| ||| |||| |||||||||||| |||||||||||||||||||||| | ||||| | | || |||    
T  38027355 aaaacaagaatgggttttcgcttacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaagttccaaaaggccatcttg 38027454  T
Q  279 tggtgtatgttggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctgaaaaggaatt 378  Q
      ||||||||||||||| ||||||  |||||| ||| ||| ||||||| |||||||||||||||||||||||||||| | || ||| ||||| |||||||    
T  38027455 cagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaattgcttagccaatctgaagaggaatt 38027554  T
Q  379 cagttactgtcatccaatgggtggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttc 447  Q
    | |||| |||||||||||||||||||||||||||  |||||| |||||  |||||||| ||||||||||    
T  38027555 cggttattgtcatccaatgggtggtcttacaattccctgcaaggaagacatgtttttatatacaacttc 38027623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 202 - 447
Target Start/End: Original strand, 50913418 - 50913664
Alignment:
Q  202 tacctggtacgagacgattatcatttagtgcaagtcgatcatctagcaaacaagtggaaataccaaatg-ctattttgtggtgtatgttggagaggaaat 300  Q
    |||||||||  ||| ||| ||||||||||||||||| ||||||||||||| |||||||| | ||||| | |||| |||  ||||||||||||||| ||||    
T  50913418 tacctggtattagaagatcatcatttagtgcaagtcaatcatctagcaaagaagtggaagtcccaaaaggctatcttgcagtgtatgttggagagaaaat 50913517  T
Q  301 gaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctgaaaaggaattcagttactgtcatccaatgggt 400  Q
    ||||||||| |||| |||| |||||| |||||||||||||||||||||||||||| | || ||||||||| |||||||  | ||||||||||||||||||    
T  50913518 gaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaatttggctactgtcatccaatgggt 50913617  T
Q  401 ggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttc 447  Q
    ||||||||||||  |||||| |||||||| || ||||||||| ||||    
T  50913618 ggtcttacaattccctgcaaggaagatgtcttcttacatacagcttc 50913664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 179 - 447
Target Start/End: Original strand, 38034954 - 38035223
Alignment:
Q  179 caaaacaataatgggttttcgcttacctggtacgagacgattatcatttagtgcaagtcgatcatctagcaaacaagtggaaataccaaatg-ctatttt 277  Q
    |||||||| |||||||||||| ||||||| ||  ||||||| ||||||||||||||||| |||||||| ||||||||||||| | ||||| | | || ||    
T  38034954 caaaacaagaatgggttttcgtttacctgctattagacgatcatcatttagtgcaagtcaatcatctaacaaacaagtggaagtcccaaaaggccatctt 38035053  T
Q  278 gtggtgtatgttggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctgaaaaggaat 377  Q
    | |||||||||||||||| |||||   |||||  ||| |||| |||||| |||||||||||||||||||||||||||| | || ||||||||| ||||||    
T  38035054 gcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaat 38035153  T
Q  378 tcagttactgtcatccaatgggtggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttc 447  Q
    || |||| |||||||||||||||||||| ||||||  |||||| ||||| || || ||||||||| ||||    
T  38035154 tcggttattgtcatccaatgggtggtctcacaattccctgcaaggaagacgtattcttacatacagcttc 38035223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 175 - 409
Target Start/End: Complemental strand, 55082933 - 55082716
Alignment:
Q  175 gaaacaaaacaataatgggttttcgcttacctggtacgagacgattatcatttagtgcaagtcgatcatctagcaaacaagtggaaataccaaatgctat 274  Q
    |||| ||||||| ||||||||| |||||||||||||  ||| ||| ||||||||||||||||| |||||||| |||||||||                ||    
T  55082933 gaaataaaacaagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt----------------at 55082850  T
Q  275 tttgtggtgtatgttggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctgaaaagg 374  Q
     |||  || |||||||||||| |||||||||||||  ||| |||||||||||  ||||||||||||||||||||||||||| | || ||||| ||| |||    
T  55082849 attgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagagg 55082750  T
Q  375 aattcagttactgtcatccaatgggtggtcttaca 409  Q
    | ||  ||||||||||||| |||||||||||||||    
T  55082749 agtttggttactgtcatcc-atgggtggtcttaca 55082716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 180 - 447
Target Start/End: Original strand, 21608157 - 21608425
Alignment:
Q  180 aaaacaataatgggttttcgcttacctggtacgagacgattatcatttagtgcaagtcgatcatctagcaaacaagtggaaataccaaatg-ctattttg 278  Q
    ||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||| ||||||||||||| | ||||| | |||| |||    
T  21608157 aaaacaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctatcaaacaagtggaagttccaaaaggctatcttg 21608256  T
Q  279 tggtgtatgttggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctgaaaaggaatt 378  Q
      ||||||||||||||| ||||||  |||||  ||| |||| |||||| |||||||||||||||||||||||||||| | || ||||||||| |||||||    
T  21608257 cagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaatt 21608356  T
Q  379 cagttactgtcatccaatgggtggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttc 447  Q
    | |||| |||||||||||||| ||||||||||||  |||||| |||||  |||| ||||||||| ||||    
T  21608357 cggttattgtcatccaatgggaggtcttacaattccctgcaaggaagacatgttcttacatacagcttc 21608425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 54 - 260
Target Start/End: Original strand, 3072139 - 3072347
Alignment:
Q  54 gaagctctcatataattcatgcaacaagctcaagctttaaggtaatgaggaatcttttgaatacataaggtcaactaccgtattcatg-----atcttct 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||| | ||||||||||||||||||     ||||||     
T  3072139 gaagctctcatataattcatgcaacaagctcaagctttaaggtaacaataaatcttttgaatacatatgatcaactaccgtattcatgtcatcatcttcc 3072238  T
Q  149 attatcagaaatttaatctcaaaactgaaacaaaacaataatgggttttcgcttacctggtacgagacgattatcatttagtgcaagtcgatcatctagc 248  Q
    |||||||||||||||||||||||  | |||| |||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||||    
T  3072239 attatcagaaatttaatctcaaa--ttaaac-aaacaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctagc 3072335  T
Q  249 aaacaagtggaa 260  Q
    ||||||| ||||    
T  3072336 aaacaagaggaa 3072347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 532
Target Start/End: Original strand, 3072391 - 3072471
Alignment:
Q  452 ttgaacgacctatgattaaattcatattgcaaaaaagtcatatgaacaatagcattagacagtaggattgactagttgaga 532  Q
    ||||||| ||||  ||||||| || | |||||||||||||||||||| | | ||||| ||||||||||| |||||||||||    
T  3072391 ttgaacggcctagaattaaatccacactgcaaaaaagtcatatgaacgaaaacattacacagtaggattaactagttgaga 3072471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 27526250 - 27526162
Alignment:
Q  281 gtgtatgttggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagctga 369  Q
    ||||||||||||||| |||||||| ||||| ||| ||| ||||||| ||||||  |  | | ||| |||||||||||||| ||||||||    
T  27526250 gtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaagctga 27526162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 27431283 - 27431201
Alignment:
Q  284 tatgttggagaggaaatgaagaggtttttgactccagtatcatgcttgaatgagcctttatttcaagaattgttgagtcaagc 366  Q
    |||||||| || ||||||||||||||| |||  ||| |||||| ||||||  | || | ||||||||||||||||| ||||||    
T  27431283 tatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagc 27431201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 11 times since January 2019
Visitors: 6046