View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_133 (Length: 228)
Name: NF0836_high_133
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_133 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 10593434 - 10593633
Alignment:
| Q |
18 |
gttataaatgtttcagtttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcatatatcgatcaaa |
117 |
Q |
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| T |
10593434 |
gttatatatgtttcagtttagacatgtcgtctttgatcacattttcctttactttgatattcttgatatcgattccacctggaatcatatatcgatcaaa |
10593533 |
T |
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| Q |
118 |
acttactcatcctgtgtaatgaaaagttgggcataattgtgtctcagtgtaatttttctgatctttgaaggcattgtgggtctagctgttacctatgata |
217 |
Q |
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| T |
10593534 |
acttactcatcctgtgtaatgaaaagttgggcataattgtgtctcagtgtaatttttttgatcttttaaggcattgtgggtctagctgttacctatgata |
10593633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 14375605 - 14375686
Alignment:
| Q |
25 |
atgtttcagtttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcata |
106 |
Q |
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| T |
14375605 |
atgtttccgtttagatatgttgtctttgatcacatttgccttttctttgatattcttgatatcgattccacctggaatcata |
14375686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 41436394 - 41436323
Alignment:
| Q |
35 |
ttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcata |
106 |
Q |
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| T |
41436394 |
ttagatatgttgtcttccatcacatttgccttttccttgatattcttgatatcgattccacctggaatcata |
41436323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 41449607 - 41449536
Alignment:
| Q |
35 |
ttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcata |
106 |
Q |
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| T |
41449607 |
ttagatatgttgtcttccatcacgtttgccttttccttgatattcttgatatcgattccacctggaatcata |
41449536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 14238523 - 14238453
Alignment:
| Q |
35 |
ttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcat |
105 |
Q |
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| T |
14238523 |
ttagatatgttgtcttccatcatatttgccttttccttggcattcttgatatcgattccacctggaatcat |
14238453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 14376914 - 14376964
Alignment:
| Q |
164 |
gtgtaatttttctgatctttgaaggcattgtgggtctagctgttacctatg |
214 |
Q |
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| T |
14376914 |
gtgtcatttttctgatttttgaaggcattgctggtctagctgttacctatg |
14376964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 41436230 - 41436186
Alignment:
| Q |
170 |
tttttctgatctttgaaggcattgtgggtctagctgttacctatg |
214 |
Q |
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| T |
41436230 |
ttttcctgatttttgaaggcattgctggtctagctgttacctatg |
41436186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 32119174 - 32119103
Alignment:
| Q |
36 |
tagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatc-gattccacctggaatcata |
106 |
Q |
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| T |
32119174 |
tagatatgttgtctttgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcata |
32119103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 32119075 - 32118988
Alignment:
| Q |
101 |
atcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctc---agtgtaatttttctgatctttga |
185 |
Q |
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| T |
32119075 |
atcatatatcaatcaaaatttactctgcttgtgtattgagaagttaggcataattgtctctccttagtgtcatttttctgatttttga |
32118988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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