View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_high_20 (Length: 539)
Name: NF0836_high_20
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 121; Significance: 9e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 274 - 423
Target Start/End: Complemental strand, 16303218 - 16303069
Alignment:
| Q |
274 |
attgcacgtacaattcgacgacaataagaacaaaataatctgatagtattgtttaagacatatatgaaatgaattgtaacatatttnnnnnnnttgagga |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16303218 |
attgcacgtacaattcgacgacaataagaacaaaataatctgatagtattgttcaagacatatatgaaatgaattgtaacatatttaaaaaaattgagga |
16303119 |
T |
|
| Q |
374 |
cgccgaaattttgttaataaaaatggcattgttgattatgttactggtaa |
423 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16303118 |
cgccgaaattttgttaataaaagtggcattgttgattatgttactggtaa |
16303069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 510
Target Start/End: Complemental strand, 16303078 - 16303017
Alignment:
| Q |
449 |
ttactggtaaaatttaaacttcatcccttgagattataaagtaaagccctgaccattgagtt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16303078 |
ttactggtaaaatttaaacttcatcccttgagattataaagtaaagccctgaccattgagtt |
16303017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 16303454 - 16303328
Alignment:
| Q |
51 |
tcttttgagttaacataaccacacccttttgggtttttgagtcacaagcaaactctttcaggttattnnnnnnnnnnnnnnnnnccacaacaaaatgagt |
150 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16303454 |
tcttttgagttaacatagccacacctttttgggattttgagtcagaagcaaactctttcaggttatt---aaaaaaaaaaggaaccacgacaaaatgagt |
16303358 |
T |
|
| Q |
151 |
ctcaagtttgaagccaccacaatctctaat |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16303357 |
ctcaagtttgaagccaccacaatctctaat |
16303328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13 times since January 2019
Visitors: 6046