View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_high_27 (Length: 492)

Name: NF0836_high_27
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_high_27
NF0836_high_27
[»] chr3 (10 HSPs)
chr3 (263-484)||(5175453-5175672)
chr3 (113-199)||(5175736-5175822)
chr3 (270-403)||(46235403-46235535)
chr3 (263-403)||(43747787-43747926)
chr3 (270-456)||(38888259-38888441)
chr3 (336-476)||(5185738-5185875)
chr3 (53-112)||(5176328-5176388)
chr3 (263-345)||(8319936-8320018)
chr3 (263-317)||(40686980-40687034)
chr3 (272-345)||(34672603-34672675)
[»] chr1 (4 HSPs)
chr1 (263-457)||(8170417-8170608)
chr1 (263-457)||(4795949-4796140)
chr1 (263-449)||(25659004-25659187)
chr1 (272-345)||(41318499-41318572)
[»] chr7 (2 HSPs)
chr7 (263-457)||(2430624-2430815)
chr7 (272-345)||(42561818-42561891)
[»] chr4 (8 HSPs)
chr4 (263-457)||(49889245-49889436)
chr4 (263-398)||(49233199-49233333)
chr4 (263-449)||(53921821-53922002)
chr4 (272-395)||(30658062-30658193)
chr4 (309-398)||(45781799-45781887)
chr4 (414-455)||(30657800-30657841)
chr4 (272-378)||(33189074-33189180)
chr4 (272-345)||(43277477-43277550)
[»] chr5 (4 HSPs)
chr5 (263-403)||(7529761-7529900)
chr5 (263-398)||(35467931-35468065)
chr5 (337-455)||(9269609-9269724)
chr5 (414-457)||(35467551-35467594)
[»] chr8 (4 HSPs)
chr8 (263-449)||(26747819-26748002)
chr8 (263-403)||(27631582-27631721)
chr8 (263-458)||(24100704-24100893)
chr8 (275-345)||(9990870-9990940)
[»] scaffold0096 (1 HSPs)
scaffold0096 (263-449)||(27852-28036)
[»] chr2 (2 HSPs)
chr2 (320-457)||(5077223-5077357)
chr2 (271-345)||(8588477-8588551)
[»] scaffold0060 (1 HSPs)
scaffold0060 (275-403)||(67722-67850)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 263 - 484
Target Start/End: Complemental strand, 5175672 - 5175453
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5175672 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagataaaaataactttgataagacaaca 5175573  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaaacaaaaagacatg 462  Q
    |||||||||||||||| |||||||||||||| |||||||||         |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5175572 ttataatttatgattaattgaaaaaccaatgacatattaga--cttttttatcttcttccctctttgttctcacttttgaagagaaaacaaaaagacatg 5175475  T
Q  463 gaacctatcttttattcatctc 484  Q
    || ||||| |||||||| ||||    
T  5175474 gagcctattttttattcttctc 5175453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 5175822 - 5175736
Alignment:
Q  113 gtaatttacaaatgtaaccattaagtaaatcaaataaaaagggatcaaattcagcaataagggcatgtttggtttgtaagggaagtt 199  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5175822 gtaatttacaaatgtaaccattaagtaaatgaaataaaaagggatcaaattcagcaataagggcatgtttggtttggaagggaagtt 5175736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 270 - 403
Target Start/End: Complemental strand, 46235535 - 46235403
Alignment:
Q  270 tattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaacattataat 369  Q
    ||||||||||||||||| ||| |||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||| | ||||||||||| |||||||||    
T  46235535 tattgtttggtataagagaaagaagagagaaatagaagagaaagaaatgttattattt-ttaaaaagacaaaaatatccttgataagacatcattataat 46235437  T
Q  370 ttatgattagttgaaaaaccaatggcatattaga 403  Q
    ||||||||| || |||||||||||||||| ||||    
T  46235436 ttatgattaattaaaaaaccaatggcataataga 46235403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 263 - 403
Target Start/End: Original strand, 43747787 - 43747926
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| ||||||||||||||||| ||| |||||||||||| ||| ||||||| | ||||||||| ||||||| ||||||||| | ||||||||||||||    
T  43747787 tttgatgtattgtttggtataagagaaagaagagagaaatagaagagaaagaaatgttattattt-ttaaaaaaacaaaaatatccttgataagacaaca 43747885  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattaga 403  Q
    ||||||||||||| || || |||||||||||||||| ||||    
T  43747886 ttataatttatgaataattaaaaaaccaatggcataataga 43747926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 270 - 456
Target Start/End: Complemental strand, 38888441 - 38888259
Alignment:
Q  270 tattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaacattataat 369  Q
    |||||||||||| | || ||| |||||||||||| ||| ||||||| | || |||||| ||||||||| ||||||| | |||||||||||||||||||||    
T  38888441 tattgtttggtacaggagaaagaagagagaaatagaagagaaagaaatgttgttattt-ttaaaaagataaaaatatccttgataagacaacattataat 38888343  T
Q  370 ttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaaacaaaaa 456  Q
    ||||||||| || |||||||||||||||| ||||          ||||||| ||||||| |||||||||||||||| ||||||||||    
T  38888342 ttatgattaattaaaaaaccaatggcataatagacttttttg--tcttcttccctctttcttctcacttttgaaga-aaaacaaaaa 38888259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 336 - 476
Target Start/End: Complemental strand, 5185875 - 5185738
Alignment:
Q  336 gacaaaaataactttgataagacaacattataatttatgattagttg-aaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctc 434  Q
    |||||||||||| |||||||| ||| ||||||||||||||||| ||| |||||||||||| ||||||||          | ||||||||||||| |||||    
T  5185875 gacaaaaataacgttgataagccaatattataatttatgattaattgaaaaaaccaatggtatattagacttttg----tgttctttcctctttcttctc 5185780  T
Q  435 acttttgaagagaaaacaaaaagacatggaacctatctttta 476  Q
     ||||||||||||||||||||||  |||| ||| ||||||||    
T  5185779 ccttttgaagagaaaacaaaaaggtatgggacccatctttta 5185738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 5176388 - 5176328
Alignment:
Q  53 ttgttttccttctctttttgcaagtttgcatgag-ttttattttccctttgctttggtatc 112  Q
    |||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  5176388 ttgttttccttctctttttgcaagtttgtatgagttttttttttccctttgctttggtatc 5176328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 345
Target Start/End: Original strand, 8319936 - 8320018
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaata 345  Q
    |||||||  ||||||||||||||| ||| |||||||||||| ||| ||||||| ||||||| ||| || ||||||||||||||    
T  8319936 tttgatagcttgtttggtataagagaaagaagagagaaatagaagagaaagaaatattattgttttttgaaaagacaaaaata 8320018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 40687034 - 40686980
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagt 317  Q
    |||||| ||||||||||||||||| ||| |||||||||| | ||| |||||||||    
T  40687034 tttgatgtattgtttggtataagagaaagaagagagaaaaagaagagaaagaagt 40686980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 34672675 - 34672603
Alignment:
Q  272 ttgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaata 345  Q
    ||||||| | ||||| ||| |||||||||||| ||| ||||||||| | ||||||| || ||||||||||||||    
T  34672675 ttgtttgatgtaagagaaagaagagagaaatagaagagaaagaagtgtgattattt-tttaaaagacaaaaata 34672603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 263 - 457
Target Start/End: Original strand, 8170417 - 8170608
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| |||| |||| ||||||| ||| |||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||| | ||||||||||||||    
T  8170417 tttgatgtattatttgatataagagaaagaagagagaaatagaagagaaagaaatgttattattt-ttaaaaagacaaaaatatccttgataagacaaca 8170515  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaaacaaaaag 457  Q
    |||||||||||||||| |||||||| |||||||||||||||          ||||||||||||||| ||||||||||||||||||||||||||||    
T  8170516 ttataatttatgattaattgaaaaatcaatggcatattagacatttttg--tcttctttcctctttcttctcacttttgaagagaaaacaaaaag 8170608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 263 - 457
Target Start/End: Original strand, 4795949 - 4796140
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| |||| |||||||||||| ||| |||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||| | ||||||| ||||||    
T  4795949 tttgatgtattatttggtataagagaaagaagagagaaatagaagagaaagaaatgttattattt-ttaaaaagacaaaaatatccttgataaaacaaca 4796047  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaaacaaaaag 457  Q
    |||||||||||||||| |||||||| |||||||||||||||          ||||||| ||||||| |||||||||||||||||||||| |||||    
T  4796048 ttataatttatgattaattgaaaaatcaatggcatattagacatttttg--tcttcttccctctttcttctcacttttgaagagaaaactaaaag 4796140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 263 - 449
Target Start/End: Original strand, 25659004 - 25659187
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| ||||||||||||||||| ||| |||||||||||| ||| ||||||| |  |||||||| ||||||||||||||||| ||||||||||||||||    
T  25659004 tttgatgtattgtttggtataagagaaagaagagagaaatagaagagaaagaaatgatattattt-ttaaaaagacaaaaatatctttgataagacaaca 25659102  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaa 449  Q
    |||||||||||||||| || ||||||||||| |||| ||||          ||||||| ||||||| ||||||||||||||||||||    
T  25659103 ttataatttatgattaattaaaaaaccaatgacataatagacttttttg--tcttcttccctctttcttctcacttttgaagagaaa 25659187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 41318499 - 41318572
Alignment:
Q  272 ttgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaata 345  Q
    ||||||| ||||||| ||| | |||||||||| ||| ||||||||| |  |||| | |||||||||||||||||    
T  41318499 ttgtttgatataagagaaagatgagagaaatagaagagaaagaagtgtgtttatattttaaaaagacaaaaata 41318572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 263 - 457
Target Start/End: Original strand, 2430624 - 2430815
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| ||||||||||||||||| ||| |||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||| | || |||||||||||    
T  2430624 tttgatgtattgtttggtataagagaaagaagagagaaatagaagagaaagaaatgttattattt-ttaaaaagacaaaaatatccttaataagacaaca 2430722  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaaacaaaaag 457  Q
    |||||||||||||||| || ||||| |||||||||||||||          ||||||| ||||||| ||||||||||||||||||||||||||||    
T  2430723 ttataatttatgattaattaaaaaatcaatggcatattagacatttttg--tcttcttccctctttcttctcacttttgaagagaaaacaaaaag 2430815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 42561891 - 42561818
Alignment:
Q  272 ttgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaata 345  Q
    ||||||| ||||||| ||| |||||||||||| ||| ||||||||| |  |||  | |||||||||||||||||    
T  42561891 ttgtttgatataagagaaagaagagagaaatagaagagaaagaagtgtgtttagattttaaaaagacaaaaata 42561818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 263 - 457
Target Start/End: Original strand, 49889245 - 49889436
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||| ||||||||||||||||||| ||| |||| ||||||| ||| |||| || |  |||||||| ||||||||||||||||| ||||||||||||||||    
T  49889245 tttgttatattgtttggtataagagaaagaagatagaaatagaagagaaataaatgctattattt-ttaaaaagacaaaaatatctttgataagacaaca 49889343  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaaacaaaaag 457  Q
    |||||||||||||||| || |||||  |||| |||||||||          ||||||| ||||||| ||||||||||||||||||||||||||||    
T  49889344 ttataatttatgattaattaaaaaattaatgacatattagatatttttg--tcttcttccctctttcttctcacttttgaagagaaaacaaaaag 49889436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 263 - 398
Target Start/End: Complemental strand, 49233333 - 49233199
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| |||| |||||||||||| ||| |||||||||||| ||| |||| || | ||||||||| ||||||||||||||||| | ||||||||||||||    
T  49233333 tttgatgtattctttggtataagataaagaagagagaaatagaagagaaacaaatgttattattt-ttaaaaagacaaaaatatccttgataagacaaca 49233235  T
Q  363 ttataatttatgattagttgaaaaaccaatggcata 398  Q
    |||||||||||||| | || ||||||||| ||||||    
T  49233234 ttataatttatgatcaattaaaaaaccaacggcata 49233199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 263 - 449
Target Start/End: Complemental strand, 53922002 - 53921821
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| ||||||||||||||| | ||| |||||||||||| |||  ||| || | ||||||||| | |||| || ||||||| | ||||||||||||||    
T  53922002 tttgatgtattgtttggtataaaagaaagaagagagaaatagaagaaaaaaaaatgttattattt-tcaaaaggataaaaatatccttgataagacaaca 53921904  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaa 449  Q
    ||||||||||||||   || ||||||||||| |||||||||          ||||||| ||||||| ||||||||||||||||||||    
T  53921903 ttataatttatgat---ttaaaaaaccaatgacatattagactttttttg-tcttcttccctctttcttctcacttttgaagagaaa 53921821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 395
Target Start/End: Complemental strand, 30658193 - 30658062
Alignment:
Q  272 ttgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataaga--------caacat 363  Q
    ||||||||||||| | ||| |||||||||||| |||  |||||  | ||||| ||| ||||||||||||||||| | |||||||||        ||||||    
T  30658193 ttgtttggtataatagaaagaagagagaaatagaagataaagagatgttattgttttttaaaaagacaaaaatatccttgataagatcataagacaacat 30658094  T
Q  364 tataatttatgattagttgaaaaaccaatggc 395  Q
    ||||||||||||||| || |||||||||||||    
T  30658093 tataatttatgattaattaaaaaaccaatggc 30658062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 45781887 - 45781799
Alignment:
Q  309 gaaagaagtattattatttattaaaaagacaaaaataactttgataagacaacattataatttatgattagttgaaaaaccaatggcata 398  Q
    ||||||| | ||||||||| |||||||| |||||||| | ||||||||| ||||||| |||||||||||| || ||||||||||| ||||    
T  45781887 gaaagaaatgttattattt-ttaaaaagtcaaaaatatccttgataagataacattacaatttatgattaattaaaaaaccaatgacata 45781799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 30657841 - 30657800
Alignment:
Q  414 tcttctttcctctttgttctcacttttgaagagaaaacaaaa 455  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  30657841 tcttcttccctctttcttctcacttttgaagagaaaacaaaa 30657800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 378
Target Start/End: Complemental strand, 33189180 - 33189074
Alignment:
Q  272 ttgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttg-ataagacaacattataatt 370  Q
    |||||||| |||||| ||| |||||||||||| ||| |||| |  ||||||| ||| || |||||||||||||| | ||| |||| |||||| |||||||    
T  33189180 ttgtttggaataagataaagaagagagaaatagaagagaaaaagatattattgttttttgaaaagacaaaaatatccttgaataaaacaaca-tataatt 33189082  T
Q  371 tatgatta 378  Q
    ||| ||||    
T  33189081 tattatta 33189074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 43277477 - 43277550
Alignment:
Q  272 ttgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaata 345  Q
    ||||||| ||||||| ||| |||||||||||  ||| ||||||  ||||| ||||| || ||||||||||||||    
T  43277477 ttgtttgatataagagaaagaagagagaaattgaagagaaagagatattactattttttgaaaagacaaaaata 43277550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 263 - 403
Target Start/End: Original strand, 7529761 - 7529900
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| ||||||||||||||||| ||| |||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||| | ||||||||||||||    
T  7529761 tttgatgtattgtttggtataagagaaaaaagagagaaatagaagagaaagaaatgttattattt-ttaaaaagacaaaaatatccttgataagacaaca 7529859  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattaga 403  Q
    ||||  |||||||||| || ||||| |||||||||||||||    
T  7529860 ttattttttatgattaattaaaaaatcaatggcatattaga 7529900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 263 - 398
Target Start/End: Complemental strand, 35468065 - 35467931
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| ||||||||||||||||| ||| |||||||||||| ||| ||||||| |  |||||||| ||||||||||||||||| | ||||||| ||||||    
T  35468065 tttgatgtattgtttggtataagagaaagaagagagaaatagaagagaaagaaatgctattattt-ttaaaaagacaaaaatatccttgataaaacaaca 35467967  T
Q  363 ttataatttatgattagttgaaaaaccaatggcata 398  Q
    |||||||||||||||| || ||||| ||||||||||    
T  35467966 ttataatttatgattaattaaaaaatcaatggcata 35467931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 455
Target Start/End: Original strand, 9269609 - 9269724
Alignment:
Q  337 acaaaaataactttgataagacaacattataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcac 436  Q
    ||||||||||  |||||||||||||||||||||||||||||| || ||||||||||  ||||| | |          ||||||| ||||||| |||||||    
T  9269609 acaaaaataatcttgataagacaacattataatttatgattaatt-aaaaaccaataacatatcatacttttttg--tcttcttccctctttcttctcac 9269705  T
Q  437 ttttgaagagaaaacaaaa 455  Q
    |||| ||||||||||||||    
T  9269706 ttttaaagagaaaacaaaa 9269724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 35467594 - 35467551
Alignment:
Q  414 tcttctttcctctttgttctcacttttgaagagaaaacaaaaag 457  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||    
T  35467594 tcttcttccctctttcttctcacttttgaagagaaaacaaaaag 35467551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 263 - 449
Target Start/End: Complemental strand, 26748002 - 26747819
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| |||||| |||||||||| ||| |||||||||||| ||| ||||||| | ||||||||| |||||| |||||||||| | ||||||||||||||    
T  26748002 tttgatgtattgtatggtataagagaaagaagagagaaatagaagagaaagaaatgttattattttttaaaa-gacaaaaatatccttgataagacaaca 26747904  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaa 449  Q
    || ||||||||||||| || |||||||||||||||| ||||          ||||||| ||||||| ||||||||||||||||||||    
T  26747903 ttctaatttatgattaattaaaaaaccaatggcataatagacttttttg--tcttcttccctctttcttctcacttttgaagagaaa 26747819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 403
Target Start/End: Original strand, 27631582 - 27631721
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| ||||||||||||||| | ||| |||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||| | || |||||| ||||    
T  27631582 tttgatgtattgtttggtataaaagaaagaagagagaaatagaagagaaagaaatgttattattt-ttaaaaagacaaaaatatccttaataagataaca 27631680  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattaga 403  Q
    ||| | |||||||||| || |||||||||||||||| ||||    
T  27631681 ttacactttatgattaattaaaaaaccaatggcataataga 27631721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 458
Target Start/End: Original strand, 24100704 - 24100893
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| ||||||||||||||||| ||| || ||||||||| ||  ||||||| | ||||||||| ||||||| |||||||||   |||||||||||| |    
T  24100704 tttgatgtattgtttggtataagagaaagaatagagaaatagaaaagaaagaaatgttattattt-ttaaaaacacaaaaatattcttgataagacaaga 24100802  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaaacaaaaaga 458  Q
    |||    | ||||||| || ||||| |||||||||||||||         ||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  24100803 ttac---tcatgattaattaaaaaatcaatggcatattaga--catttttatcctcttccctctttcttctcacctttgaagagaaaacaaaaaga 24100893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 9990870 - 9990940
Alignment:
Q  275 tttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaata 345  Q
    |||||||||||| ||| |||||||||||| ||| ||||||  ||||||| ||| |||||||||||||||||    
T  9990870 tttggtataagagaaagaagagagaaatagaagagaaagagatattattgttttttaaaaagacaaaaata 9990940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 263 - 449
Target Start/End: Complemental strand, 28036 - 27852
Alignment:
Q  263 tttgatatattgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaaca 362  Q
    |||||| |||||||||| |||||| ||| |||||||||||| ||| || |||| | ||||||||| ||||||||||||||||| | ||||||||||||||    
T  28036 tttgatgtattgtttggcataagagaaagaagagagaaatagaagagagagaaatgttattattt-ttaaaaagacaaaaatatccttgataagacaaca 27938  T
Q  363 ttataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttctttcctctttgttctcacttttgaagagaaa 449  Q
    ||||||||||| |||| || || ||||||||||||| ||||          |||||||||| |||| ||||||||||||||||||||    
T  27937 ttataatttataattaattaaataaccaatggcataatagactttttttg-tcttctttcccctttcttctcacttttgaagagaaa 27852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 320 - 457
Target Start/End: Original strand, 5077223 - 5077357
Alignment:
Q  320 tattatttattaaaaagacaaaaataactttgataagacaacattataatttatgattagttgaaaaaccaatggcatattagannnnnnnnnatcttct 419  Q
    |||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||| || ||||| ||||| |||||||||          ||||||    
T  5077223 tattattt-ttaaaaagacaaaaatatccttgataagacaacatcataatttatgattaattaaaaaatcaatgacatattagacttttttg--tcttct 5077319  T
Q  420 ttcctctttgttctcacttttgaagagaaaacaaaaag 457  Q
    | ||||||| ||||||||||||||||||||||||||||    
T  5077320 tccctctttcttctcacttttgaagagaaaacaaaaag 5077357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 8588477 - 8588551
Alignment:
Q  271 attgtttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaata 345  Q
    |||||||||||||||| ||| |||||||||||| ||| ||||||  | ||| ||||  |||||||||||| ||||    
T  8588477 attgtttggtataagagaaagaagagagaaatagaagagaaagagatgttactattctttaaaaagacaataata 8588551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 403
Target Start/End: Complemental strand, 67850 - 67722
Alignment:
Q  275 tttggtataagacaaataagagagaaatacaagtgaaagaagtattattatttattaaaaagacaaaaataactttgataagacaacattataatttatg 374  Q
    |||||||||||| ||| |||||| ||||| ||| ||||||| | ||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||    
T  67850 tttggtataagagaaagaagagataaatagaagagaaagaaatgttattattt-ttaaaaagacaaaaatatcattgataagacaacaatataatttatg 67752  T
Q  375 attagtt-gaaaaaccaatggcatattaga 403  Q
    |||| ||  ||||||||| |||||| ||||    
T  67751 attaattaaaaaaaccaacggcataataga 67722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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