View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_30 (Length: 466)
Name: NF0836_high_30
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 77 - 429
Target Start/End: Original strand, 34238916 - 34239268
Alignment:
| Q |
77 |
ttttaattaatgttgcaacacaaaacatgaaaattagatcgaaaatcaaaacaacatgatgttgtaaacaatatcaacctattagcctactaagggatat |
176 |
Q |
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| T |
34238916 |
ttttaattaatgttgcaacacaaaacatgaaaattagatcgaaaatcaaaacaacatgatgttgtaaacaatatcaacctattatcctactaagggatat |
34239015 |
T |
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| Q |
177 |
ttccatatgttacaaaccaactacttagtaggtaattaacttttctagagttttaacttttgaatgttaactaaaattggtaagtatcaacttaccctag |
276 |
Q |
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| T |
34239016 |
ttccatatgttataaaccaactacttagtaggtaattaacttttctagagttttaacttttgaatgttaactaaaattggtaagtatcaacttcccctag |
34239115 |
T |
|
| Q |
277 |
ctgtttcgaaactaaattaaatcatgacgaatagaatcgaaaactcaagctattaggtgacacccaataaatgaatttatttacatgtttaacaaaaaat |
376 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239116 |
ctgtttcgaaactaaattaattcatgacgaatagaatcgaaaactcaagctattaggtgacacccaataaatgaatttatttacatgtttaacaaaaaat |
34239215 |
T |
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| Q |
377 |
attataaataatgagtatggatatacagatagatagtaaccaactttgcaaca |
429 |
Q |
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| T |
34239216 |
attataaataatgagtatggatatacagatagatagtaaccaactttgcaaca |
34239268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 34238555 - 34238597
Alignment:
| Q |
43 |
agagttcatgtctggatataaaagaaacagctctttttaatta |
85 |
Q |
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| T |
34238555 |
agagttcatgtctggatataaaagaaacagctctttttaatta |
34238597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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