View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_high_31 (Length: 463)

Name: NF0836_high_31
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_high_31
NF0836_high_31
[»] chr7 (4 HSPs)
chr7 (14-435)||(38822504-38822925)
chr7 (85-430)||(38809626-38809986)
chr7 (31-294)||(38811639-38811908)
chr7 (355-430)||(38811996-38812071)
[»] chr1 (7 HSPs)
chr1 (126-279)||(32986282-32986435)
chr1 (128-256)||(30736443-30736571)
chr1 (182-228)||(39360398-39360444)
chr1 (110-156)||(40444680-40444726)
chr1 (200-257)||(32993084-32993141)
chr1 (200-257)||(32998441-32998498)
chr1 (200-264)||(33003083-33003147)
[»] chr8 (3 HSPs)
chr8 (212-315)||(35547999-35548102)
chr8 (106-153)||(1008553-1008600)
chr8 (200-232)||(8111468-8111500)


Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 38822504 - 38822925
Alignment:
Q  14 aggctaagttattatgttaacattcttgtacacacaatggaaaatgaaagaaagaaaaaggtgagtgaatgtgaattaccaaagcaaattaagtatagag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38822504 aggctaagttattatgttaacattcttgtacacacaatggaaaatgaaagaaagaaaaaggtgagtgaatgtgaattaccaaagcaaattaagtatagag 38822603  T
Q  114 gagtgaggataaggccatggggaaaatttgctgcagagattcgagattcggctaggcatggtgctcgagtttggcttggtacatttaacactgctgagga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38822604 gagtgaggataaggccatggggaaaatttgctgcagagattcgagattcggctaggcatggtgctcgagtttggcttggtacatttaacactgctgagga 38822703  T
Q  214 agctgcaagagcttatgatcgcgctgcttttgatatgagaggttcttctgctattcttaattttcctcaagaacattttccaagcaacgtggcttctaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  38822704 agctgcaagagcttatgatcgcgctgcttttgatatgagaggttcttctgctattctcaattttcctcaagaacattttccaagcaatgtggcttctaat 38822803  T
Q  314 ccctcttcttcatccaattcaacctcatcatcatcttcaacgattaaatcggagcttggtgaacaagttatagagtttgagtatttggatgaaaaattat 413  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38822804 ccctcttcttcatccaattcaacctcatcatcatcttcaacggttaaatcggagcttggtgaacaaattatagagtttgagtatttggatgaaaaattat 38822903  T
Q  414 tagaggaactcttggatcctga 435  Q
    ||||||||||||||||||||||    
T  38822904 tagaggaactcttggatcctga 38822925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 85 - 430
Target Start/End: Original strand, 38809626 - 38809986
Alignment:
Q  85 tgaattaccaaagcaaattaagtatagaggagtgaggataaggccatggggaaaatttgctgcagagattcgagattcggctaggcatggtgctcgagtt 184  Q
    ||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||    
T  38809626 tgaattaccaaagaaaataaagtatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattcggctagacatggagctcgagtt 38809725  T
Q  185 tggcttggtacatttaacactgctgaggaagctgcaagagcttatgatcgcgctgcttttgatatgagaggttcttctgctattcttaattttcctcaag 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| |    
T  38809726 tggcttggtacatttaacactgctgaggaagctgcaagagcttatgatcgtgctgcttttgaaatgagaggttcttcagctattcttaactttcctcatg 38809825  T
Q  285 aac---attttccaagcaacgtgg---------cttctaatccctcttcttcatccaattcaacc---tcatcatcatcttcaacgattaaatcggagct 369  Q
    |||   |||||||  |||  ||||         ||||||| || |||||||| ||||||||||||   |||||||||||||||| | |||||||||| ||    
T  38809826 aacattattttccttgcagtgtggtatataacccttctaagccgtcttcttcctccaattcaacctcatcatcatcatcttcaaaggttaaatcggaact 38809925  T
Q  370 tggtgaacaagttatagagtttgagtatttggatgaaaaattattagaggaactcttggat 430  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38809926 tgttgaacaagttatagagtttgagtatttggatgaaaaattattagaggaactcttggat 38809986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 31 - 294
Target Start/End: Original strand, 38811639 - 38811908
Alignment:
Q  31 taacattcttgtacacacaatggaaaatgaaagaaagaaaaaggtgagtgaatgtgaattaccaaagcaaattaagtatagaggagtgaggataaggcca 130  Q
    ||||||||||||||||||||||||||| ||   | ||  |||||||| ||||   |||||| ||| |||||| |||||||||||||  |||||  |||||    
T  38811639 taacattcttgtacacacaatggaaaacgacgtagagggaaaggtgaatgaagaggaattaacaatgcaaatcaagtatagaggagaaaggatccggcca 38811738  T
Q  131 tggggaaaatttgctgcaga-gattcgagattcggctaggcatggtgctcgagtttggcttggtacatttaacactgctgaggaagctgcaaga-----g 224  Q
    |||  ||||||| |  |  | |||| |||||||||||||||||||||||||||||||||||||||||||||| |||  | |||||||||||| |     |    
T  38811739 tggccaaaatttcccccctaagattagagattcggctaggcatggtgctcgagtttggcttggtacatttaatactagtaaggaagctgcaaaacaaggg 38811838  T
Q  225 cttatgatcgcgctgcttttgatatgagaggttcttctgctattcttaattttcctcaagaacattttcc 294  Q
    |||||||||  ||||||||||| |||||||||||||  || ||||| || ||||| || |||||||||||    
T  38811839 cttatgatcatgctgcttttgaaatgagaggttctttggccattctcaactttccacatgaacattttcc 38811908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 38811996 - 38812071
Alignment:
Q  355 gattaaatcggagcttggtgaacaagttatagagtttgagtatttggatgaaaaattattagaggaactcttggat 430  Q
    ||||||||| |||||||||||||||||| |||| |||||||||| |||||||| ||| ||||||||||||||||||    
T  38811996 gattaaatcagagcttggtgaacaagttctagattttgagtattgggatgaaacattgttagaggaactcttggat 38812071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 279
Target Start/End: Original strand, 32986282 - 32986435
Alignment:
Q  126 ggccatggggaaaatttgctgcagagattcgagattcggctaggcatggtgctcgagtttggcttggtacatttaacactgctgaggaagctgcaagagc 225  Q
    ||||||||||||||||||| || |||||||| |||||   |||||| |||    |  | |||||||| || || ||||||||||| ||||||||||||||    
T  32986282 ggccatggggaaaatttgcggccgagattcgtgattccaataggcaaggtcagaggatatggcttggcactttcaacactgctgaagaagctgcaagagc 32986381  T
Q  226 ttatgatcgcgctgcttttgatatgagaggttcttctgctattcttaattttcc 279  Q
    ||||||| | ||||||||| ||||||||||||| | ||| ||||||||||||||    
T  32986382 ttatgatagagctgcttttaatatgagaggttcatttgcaattcttaattttcc 32986435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 30736571 - 30736443
Alignment:
Q  128 ccatggggaaaatttgctgcagagattcgagattcggctaggcatggtgctcgagtttggcttggtacatttaacactgctgaggaagctgcaagagctt 227  Q
    ||||||||||| ||||| || |||||||| ||  | ||||| |  ||||| || || ||||| || ||||||  ||| || |||||||||||||||||||    
T  30736571 ccatggggaaagtttgcggctgagattcgggacccagctagacgcggtgcacgcgtgtggctaggcacatttctcaccgcggaggaagctgcaagagctt 30736472  T
Q  228 atgatcgcgctgcttttgatatgagaggt 256  Q
    ||||||| ||||||||||| |||||||||    
T  30736471 atgatcgtgctgcttttgagatgagaggt 30736443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 39360398 - 39360444
Alignment:
Q  182 gtttggcttggtacatttaacactgctgaggaagctgcaagagctta 228  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  39360398 gtttggcttggtacattcaacactgctgaagaagctgctagagctta 39360444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 40444726 - 40444680
Alignment:
Q  110 agaggagtgaggataaggccatggggaaaatttgctgcagagattcg 156  Q
    |||||||| |||| ||||||||||||||||| ||||||||| |||||    
T  40444726 agaggagtaaggagaaggccatggggaaaatatgctgcagaaattcg 40444680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 32993084 - 32993141
Alignment:
Q  200 aacactgctgaggaagctgcaagagcttatgatcgcgctgcttttgatatgagaggtt 257  Q
    ||||||||||||||||| || |||||||||||| | | ||||||| ||||||| ||||    
T  32993084 aacactgctgaggaagcagctagagcttatgatagagatgcttttaatatgaggggtt 32993141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 32998441 - 32998498
Alignment:
Q  200 aacactgctgaggaagctgcaagagcttatgatcgcgctgcttttgatatgagaggtt 257  Q
    ||||||||||||||||| || |||||||||||| | | ||||||| ||||||| ||||    
T  32998441 aacactgctgaggaagcagctagagcttatgatagagatgcttttaatatgaggggtt 32998498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 33003083 - 33003147
Alignment:
Q  200 aacactgctgaggaagctgcaagagcttatgatcgcgctgcttttgatatgagaggttcttctgc 264  Q
    ||||||||||| ||||| || |||||||||||| | ||||||| | ||||||| ||||| |||||    
T  33003083 aacactgctgatgaagcggctagagcttatgatagagctgcttataatatgagtggttcatctgc 33003147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 35547999 - 35548102
Alignment:
Q  212 gaagctgcaagagcttatgatcgcgctgcttttgatatgagaggttcttctgctattcttaattttcctcaagaacattttccaagcaacgtggcttcta 311  Q
    ||||||||||||||||||||  | |||||||| ||||| ||||||||||| |||||||| | |||||| || ||||||||||||  ||||||||||| ||    
T  35547999 gaagctgcaagagcttatgactgtgctgctttcgatattagaggttcttcagctattctaatttttccacatgaacattttccatacaacgtggcttata 35548098  T
Q  312 atcc 315  Q
    ||||    
T  35548099 atcc 35548102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 1008553 - 1008600
Alignment:
Q  106 gtatagaggagtgaggataaggccatggggaaaatttgctgcagagat 153  Q
    ||||||||| ||||||  |||||||||||| |||||||||||||||||    
T  1008553 gtatagaggtgtgaggcgaaggccatgggggaaatttgctgcagagat 1008600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 8111500 - 8111468
Alignment:
Q  200 aacactgctgaggaagctgcaagagcttatgat 232  Q
    ||||||||||| |||||||||||||||||||||    
T  8111500 aacactgctgaagaagctgcaagagcttatgat 8111468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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