View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_34 (Length: 445)
Name: NF0836_high_34
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Original strand, 42893915 - 42894317
Alignment:
| Q |
14 |
agaggaagaagatgagtagaagaaacggaagtgggccaaagctagatttgaagctgaatttgtcaccaccaagggtgaacagaagaatggaatcatcacc |
113 |
Q |
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| T |
42893915 |
agaggaagaagatgagtagaagaaacggaagtgggccaaagctagatttgaagctgaatttgtcaccaccaagggtgaacagaagaatggaatcatcacc |
42894014 |
T |
|
| Q |
114 |
aacacgatcagcgtcggtgtcgccgccgagttcatgtgtttcatctgagaatggatcaagcagccctgaagcaacctccatgctgttagtaggttgtcct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894015 |
aacacgatcagcgtcggtgtcgccgccgagttcatgtgtttcatctgagaatggatcaagcagccctgaagcaacctccatgctgttagtaggttgtcct |
42894114 |
T |
|
| Q |
214 |
cgttgtctcatgtatgtgatgctctctgagaatgatccaaaatgtccaaaatgtcacagcaccgttttgcttgattttctcaacgctgagaacaacaaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894115 |
cgttgtctcatgtatgtgatgctctctgagaatgatccaaaatgtccaaaatgtcacagcaccgttttgcttgattttctcaacgctgagaacaacaaca |
42894214 |
T |
|
| Q |
314 |
ataagaagagttagagtaataacagagttagaaacagagtactctgtttcaaacctctgtttttctaagagctaggaatattatcattaatagtagtatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894215 |
ataagaagagttagagtaataacagagttagaaacagagtactctgtttcaaacctctgtttttctaagagctaggaatattatcattaatagtagtatt |
42894314 |
T |
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| Q |
414 |
agt |
416 |
Q |
| |
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||| |
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| T |
42894315 |
agt |
42894317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 25583747 - 25583631
Alignment:
| Q |
174 |
cagccctgaagcaacctccatgctgttagtaggttgtcctcgttgtctcatgtatgtgatgctctctgagaatgatccaaaatgtccaaaatgtcacagc |
273 |
Q |
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|||||| ||||| || |||||| | || || ||||||||||||||||| |||||||| ||||| ||||| |||||||||| || || |||||| | ||| |
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| T |
25583747 |
cagcccagaagccacttccatggttttggttggttgtcctcgttgtcttatgtatgtcatgctttctgaagatgatccaaagtgccctaaatgtaaaagc |
25583648 |
T |
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| Q |
274 |
accgttttgcttgattt |
290 |
Q |
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|| ||||| |||||||| |
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| T |
25583647 |
actgttttacttgattt |
25583631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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