View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_high_4 (Length: 790)

Name: NF0836_high_4
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_high_4
NF0836_high_4
[»] chr6 (25 HSPs)
chr6 (472-644)||(32315028-32315197)
chr6 (43-239)||(9698239-9698435)
chr6 (44-231)||(26669923-26670110)
chr6 (44-239)||(3213399-3213594)
chr6 (44-243)||(7273237-7273436)
chr6 (43-238)||(21293584-21293779)
chr6 (44-239)||(7367548-7367743)
chr6 (47-237)||(30735984-30736174)
chr6 (43-239)||(21279927-21280123)
chr6 (44-231)||(7292746-7292933)
chr6 (44-239)||(26466798-26466993)
chr6 (45-236)||(30014343-30014534)
chr6 (47-237)||(24203895-24204085)
chr6 (45-236)||(13743130-13743321)
chr6 (45-236)||(13748630-13748821)
chr6 (238-315)||(32315356-32315433)
chr6 (44-144)||(33242402-33242502)
chr6 (47-144)||(27441544-27441641)
chr6 (43-122)||(31109245-31109324)
chr6 (45-144)||(33253913-33254012)
chr6 (168-237)||(33242526-33242595)
chr6 (168-240)||(27441665-27441737)
chr6 (180-238)||(33254049-33254107)
chr6 (170-211)||(22880690-22880732)
chr6 (168-213)||(31109154-31109199)
[»] chr8 (32 HSPs)
chr8 (44-238)||(36743390-36743584)
chr8 (45-238)||(11582766-11582959)
chr8 (45-232)||(29705362-29705549)
chr8 (43-236)||(42197344-42197537)
chr8 (46-238)||(45397317-45397508)
chr8 (45-233)||(2165875-2166063)
chr8 (47-231)||(29800864-29801048)
chr8 (47-239)||(30912468-30912660)
chr8 (43-237)||(2546994-2547188)
chr8 (47-239)||(20148762-20148954)
chr8 (44-240)||(30660647-30660843)
chr8 (47-237)||(42295197-42295386)
chr8 (47-236)||(26125637-26125825)
chr8 (61-237)||(3743787-3743963)
chr8 (44-214)||(5754902-5755072)
chr8 (43-237)||(31384662-31384856)
chr8 (87-237)||(9241594-9241744)
chr8 (45-239)||(1375542-1375736)
chr8 (43-237)||(40528542-40528737)
chr8 (47-141)||(42699259-42699353)
chr8 (44-144)||(35181515-35181615)
chr8 (44-144)||(34304787-34304887)
chr8 (43-144)||(18066719-18066820)
chr8 (47-144)||(33629994-33630091)
chr8 (43-138)||(16603633-16603728)
chr8 (168-238)||(35181639-35181709)
chr8 (168-239)||(34304911-34304981)
chr8 (46-139)||(16358839-16358933)
chr8 (168-237)||(10678060-10678129)
chr8 (45-82)||(28977146-28977183)
chr8 (170-211)||(14547948-14547990)
chr8 (168-237)||(33629901-33629970)
[»] chr4 (44 HSPs)
chr4 (44-239)||(1771172-1771367)
chr4 (45-239)||(27550309-27550503)
chr4 (44-241)||(27864563-27864760)
chr4 (44-237)||(25051692-25051885)
chr4 (44-237)||(33703140-33703333)
chr4 (45-237)||(35017733-35017924)
chr4 (44-239)||(28982728-28982923)
chr4 (44-238)||(23035979-23036173)
chr4 (44-239)||(55966252-55966447)
chr4 (47-237)||(27893750-27893940)
chr4 (43-231)||(48463364-48463552)
chr4 (47-238)||(31680904-31681095)
chr4 (47-237)||(43514594-43514784)
chr4 (48-237)||(23204686-23204875)
chr4 (47-237)||(43949709-43949900)
chr4 (45-237)||(12496956-12497148)
chr4 (47-239)||(43735744-43735936)
chr4 (45-238)||(27316619-27316813)
chr4 (47-219)||(39631102-39631275)
chr4 (44-239)||(28988472-28988666)
chr4 (46-206)||(41878407-41878567)
chr4 (87-237)||(51512173-51512323)
chr4 (45-231)||(41847971-41848157)
chr4 (43-244)||(21687004-21687205)
chr4 (45-231)||(45490227-45490413)
chr4 (47-197)||(46412417-46412557)
chr4 (47-231)||(41327457-41327641)
chr4 (45-144)||(17619153-17619252)
chr4 (44-144)||(711959-712059)
chr4 (45-144)||(55272377-55272476)
chr4 (99-238)||(56215805-56215943)
chr4 (168-238)||(19880077-19880147)
chr4 (47-112)||(3756279-3756344)
chr4 (43-144)||(32728355-32728456)
chr4 (43-144)||(48435580-48435681)
chr4 (168-237)||(55272284-55272353)
chr4 (47-133)||(35037007-35037093)
chr4 (168-231)||(712083-712146)
chr4 (168-240)||(17619057-17619129)
chr4 (168-236)||(35037128-35037195)
chr4 (44-123)||(960892-960971)
chr4 (180-245)||(32728492-32728557)
chr4 (168-237)||(48435487-48435556)
chr4 (167-211)||(50526200-50526245)
[»] chr7 (35 HSPs)
chr7 (45-238)||(24000919-24001112)
chr7 (45-237)||(42538339-42538531)
chr7 (47-238)||(44416841-44417032)
chr7 (45-239)||(5810830-5811024)
chr7 (47-237)||(43343532-43343722)
chr7 (43-239)||(35069719-35069915)
chr7 (44-231)||(5015394-5015581)
chr7 (67-237)||(32029725-32029895)
chr7 (45-239)||(45326020-45326214)
chr7 (45-238)||(42972852-42973045)
chr7 (47-239)||(44326180-44326372)
chr7 (47-239)||(16180263-16180454)
chr7 (48-237)||(26898310-26898499)
chr7 (61-234)||(27393171-27393344)
chr7 (44-237)||(41861673-41861868)
chr7 (47-237)||(10573751-10573941)
chr7 (43-237)||(43317441-43317635)
chr7 (47-238)||(4638106-4638297)
chr7 (43-231)||(5194145-5194333)
chr7 (43-239)||(9216300-9216495)
chr7 (68-219)||(38160505-38160656)
chr7 (43-206)||(24280535-24280698)
chr7 (125-239)||(47279630-47279744)
chr7 (46-144)||(31408634-31408732)
chr7 (44-133)||(40236918-40237007)
chr7 (45-144)||(31513287-31513386)
chr7 (168-238)||(40237042-40237112)
chr7 (199-238)||(38160469-38160508)
chr7 (45-112)||(39998408-39998475)
chr7 (44-144)||(27535232-27535332)
chr7 (168-211)||(35522902-35522946)
chr7 (168-239)||(31408539-31408610)
chr7 (168-239)||(31513410-31513481)
chr7 (43-78)||(38160661-38160696)
chr7 (44-144)||(33384869-33384970)
[»] chr5 (19 HSPs)
chr5 (45-238)||(2614556-2614749)
chr5 (45-237)||(41334571-41334763)
chr5 (44-237)||(18033981-18034174)
chr5 (44-231)||(38470578-38470765)
chr5 (47-238)||(5256997-5257188)
chr5 (44-239)||(7617132-7617327)
chr5 (45-212)||(22512305-22512472)
chr5 (44-238)||(33801468-33801662)
chr5 (47-239)||(25914902-25915085)
chr5 (43-212)||(39122366-39122534)
chr5 (132-239)||(39122262-39122369)
chr5 (45-144)||(32473395-32473494)
chr5 (45-120)||(33855068-33855143)
chr5 (43-144)||(17208072-17208173)
chr5 (168-237)||(30622627-30622696)
chr5 (168-236)||(32473303-32473371)
chr5 (44-144)||(30622720-30622819)
chr5 (167-211)||(6679724-6679769)
chr5 (167-211)||(28177801-28177846)
[»] chr3 (35 HSPs)
chr3 (44-237)||(24688310-24688503)
chr3 (44-238)||(46941052-46941246)
chr3 (44-237)||(40808864-40809057)
chr3 (45-237)||(42100688-42100880)
chr3 (46-245)||(42394319-42394518)
chr3 (44-239)||(47190932-47191126)
chr3 (46-237)||(54237097-54237288)
chr3 (43-238)||(25413679-25413874)
chr3 (45-237)||(45126836-45127028)
chr3 (44-240)||(54246053-54246249)
chr3 (47-237)||(53581766-53581956)
chr3 (45-239)||(36150130-36150324)
chr3 (46-237)||(40480750-40480941)
chr3 (87-238)||(52629870-52630021)
chr3 (47-239)||(1078229-1078412)
chr3 (44-239)||(53273599-53273785)
chr3 (47-237)||(27748565-27748746)
chr3 (44-239)||(11064628-11064821)
chr3 (60-186)||(51249323-51249449)
chr3 (44-144)||(4190266-4190366)
chr3 (44-144)||(9434123-9434223)
chr3 (43-133)||(25996266-25996356)
chr3 (44-144)||(10457893-10457993)
chr3 (147-239)||(29556865-29556956)
chr3 (44-147)||(29558232-29558335)
chr3 (45-144)||(34791829-34791928)
chr3 (44-144)||(52627978-52628078)
chr3 (173-227)||(19148896-19148950)
chr3 (168-237)||(9434247-9434316)
chr3 (168-240)||(10457797-10457869)
chr3 (168-239)||(4190171-4190242)
chr3 (45-144)||(51757593-51757692)
chr3 (175-230)||(54429180-54429235)
chr3 (167-211)||(26141561-26141606)
chr3 (168-237)||(51757716-51757784)
[»] chr2 (41 HSPs)
chr2 (42-239)||(30838629-30838826)
chr2 (47-239)||(43490307-43490499)
chr2 (46-245)||(19047158-19047357)
chr2 (45-237)||(1750414-1750606)
chr2 (44-238)||(12302160-12302354)
chr2 (45-237)||(16096747-16096940)
chr2 (44-237)||(43335671-43335864)
chr2 (44-238)||(4764633-4764827)
chr2 (87-236)||(42849768-42849916)
chr2 (45-204)||(13780676-13780835)
chr2 (46-239)||(34817682-34817875)
chr2 (83-238)||(39149201-39149354)
chr2 (43-232)||(42026765-42026956)
chr2 (47-123)||(33229303-33229380)
chr2 (47-144)||(41281975-41282072)
chr2 (44-237)||(43114556-43114749)
chr2 (44-144)||(16803967-16804067)
chr2 (44-144)||(16843249-16843349)
chr2 (47-186)||(8896542-8896681)
chr2 (45-144)||(12415461-12415560)
chr2 (45-144)||(12427521-12427620)
chr2 (47-144)||(11825655-11825752)
chr2 (43-138)||(18491703-18491798)
chr2 (168-239)||(34895647-34895718)
chr2 (168-237)||(11825562-11825631)
chr2 (44-144)||(966835-966935)
chr2 (168-239)||(6518400-6518471)
chr2 (168-239)||(12531569-12531640)
chr2 (44-144)||(34895742-34895842)
chr2 (47-134)||(7070418-7070505)
chr2 (180-239)||(18491840-18491899)
chr2 (168-239)||(41281880-41281951)
chr2 (168-237)||(966742-966811)
chr2 (168-237)||(4299328-4299397)
chr2 (173-237)||(12415368-12415432)
chr2 (173-237)||(12427428-12427492)
chr2 (47-130)||(6518484-6518566)
chr2 (45-80)||(42849911-42849946)
chr2 (83-144)||(4451951-4452012)
chr2 (168-237)||(16804091-16804160)
chr2 (168-237)||(16843373-16843442)
[»] chr1 (32 HSPs)
chr1 (45-237)||(43570994-43571186)
chr1 (43-239)||(750211-750407)
chr1 (44-237)||(5489775-5489968)
chr1 (45-236)||(37814778-37814969)
chr1 (44-237)||(48498870-48499063)
chr1 (44-242)||(24769402-24769600)
chr1 (47-238)||(4401329-4401521)
chr1 (47-239)||(7447828-7448019)
chr1 (45-238)||(50448167-50448360)
chr1 (47-238)||(2497469-2497660)
chr1 (44-237)||(23989431-23989625)
chr1 (87-238)||(4888085-4888235)
chr1 (44-244)||(44112676-44112876)
chr1 (45-144)||(38335918-38336017)
chr1 (45-144)||(48119628-48119727)
chr1 (45-144)||(35003294-35003393)
chr1 (43-144)||(41065151-41065252)
chr1 (43-144)||(45427746-45427847)
chr1 (43-138)||(38113202-38113297)
chr1 (45-144)||(46168383-46168482)
chr1 (43-144)||(45705823-45705924)
chr1 (44-144)||(45639733-45639833)
chr1 (45-144)||(35000114-35000213)
chr1 (168-239)||(35003417-35003488)
chr1 (168-237)||(45705948-45706017)
chr1 (165-238)||(45427652-45427725)
chr1 (168-231)||(48119751-48119814)
chr1 (170-211)||(8346420-8346462)
chr1 (44-102)||(14427346-14427404)
chr1 (167-211)||(32813273-32813318)
chr1 (168-237)||(35000021-35000090)
chr1 (180-237)||(45639640-45639697)
[»] scaffold0119 (1 HSPs)
scaffold0119 (44-231)||(684-871)
[»] scaffold0038 (1 HSPs)
scaffold0038 (46-245)||(112656-112855)
[»] scaffold0187 (2 HSPs)
scaffold0187 (43-237)||(14097-14290)
scaffold0187 (43-237)||(24425-24618)
[»] scaffold0385 (1 HSPs)
scaffold0385 (44-237)||(11250-11443)
[»] scaffold0157 (1 HSPs)
scaffold0157 (45-237)||(23329-23521)
[»] scaffold0003 (2 HSPs)
scaffold0003 (47-144)||(45720-45817)
scaffold0003 (168-240)||(45624-45696)
[»] scaffold0100 (1 HSPs)
scaffold0100 (45-144)||(35457-35556)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 3e-84; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 472 - 644
Target Start/End: Complemental strand, 32315197 - 32315028
Alignment:
Q  472 tgatttgacacccttggttggaaattttgctcaactaatgcgatagagttaaatttgtttggacacttgacgtgggtttaacaaactcactcacatgttc 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32315197 tgatttgacacccttggttggaaattttgctcaactaatgcgatagagttaaatttgtttggacacttgacgtgggtttaacaaactcactcacatgttc 32315098  T
Q  572 aattcagagtttgtagtagttcgtgatgaaaaaggaatctaacgtactgattttgtggattttgttggccttc 644  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32315097 aattcagagtttg---tagttcgtgatgaaaaaggaatctaacgtactgattttgtggattttgttggccttc 32315028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 9698435 - 9698239
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  9698435 taggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatc 9698336  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||||| |||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  9698335 ttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatcattactctt 9698239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 44 - 231
Target Start/End: Complemental strand, 26670110 - 26669923
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  26670110 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatct 26670011  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    ||||||| ||||| || ||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  26670010 tctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgaggtggtacatatatca 26669923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 3213399 - 3213594
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| | |||||||||||||| |||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||    
T  3213399 aggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatactttatct 3213498  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  3213499 tctatttatgtggggtccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 3213594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 7273436 - 7273237
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||||    
T  7273436 aggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaatcacactttatct 7273337  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttcatt 243  Q
    |||||||||||||||| ||  || ||||||||||||||||||||||||||||||  ||||||| ||||||| ||||||||||| ||||||||||||||||    
T  7273336 tctatttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattaccacatggggtggtacatgcatcatcactcttcatt 7273237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 43 - 238
Target Start/End: Complemental strand, 21293779 - 21293584
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| | |||||||||||||| ||||  ||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  21293779 taggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatc 21293680  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  21293679 ttctatttatgtggggtccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatgaggtggtacatgtatcaccactct 21293584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 7367548 - 7367743
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||  |||||| | ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |    
T  7367548 aggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccacactttattt 7367647  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||||||||||| | ||| || |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  7367648 tctatttatgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcattctt 7367743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 30735984 - 30736174
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||||  |||||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||| |||||| |||||||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaatcacactttatcttct 30736083  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||||||||| ||| || ||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||    
T  30736084 atttatgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatgggatggtacatgtatcatcactc 30736174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 21279927 - 21280123
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||||||||||| |||||   ||||| ||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  21279927 taggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcacaaccacactttatc 21280026  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||||| |||||||| ||  || |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  21280027 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtatattgccacatggggtggtacatgtatcatcactctt 21280123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 7292746 - 7292933
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    |||||||||||||  ||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  7292746 aggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 7292845  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    ||||||| |||||||| ||| || ||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||    
T  7292846 tctatttgtgtggggtccaggttgccacgtgtcagaattttgtttgtgtgtaaagggtgtattgccacatggggtggtacatgtatca 7292933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 26466798 - 26466993
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  26466798 aggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaaccacactttatct 26466897  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||| | |||||||||| || |||||| |||| ||||||| |||||||||| |||||||||||||||  ||||||| ||||||||||||||||    
T  26466898 tctatttgtttggggttcaggttgccacgtatcaggattttgtatgggtgtaaaaggtgtattgccacatagggtggtaaatgtatcatcactctt 26466993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 30014343 - 30014534
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||||||||| | |||| |||| ||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccatactttatctt 30014442  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcact 236  Q
    |||||||| |||||| ||  |||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||    
T  30014443 ctatttatatggggtccaagttaccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtgatacatgtatcatcact 30014534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 24204085 - 24203895
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||||| ||||||||||||||  ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatattct 24203986  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||||| ||  || ||||||||||||||||||||||| |||||| ||||||||| ||||||  |||||||||||||||||||||    
T  24203985 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgtcacatggagtggtacatgtatcatcactc 24203895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 13743321 - 13743130
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||||| ||||||| |||| |  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 13743222  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcact 236  Q
    |||||| |||||||| ||| || |||||||||||||| ||||||||||||||| | | |||||||||||  |||||||||||||||| ||||    
T  13743221 ctatttgtgtggggtccaggttgccacgtgtcagaatcttgtgtgggtgtaaaggatatattgccacatagggtggtacatgtatcaccact 13743130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 13748821 - 13748630
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||||| ||||||| |||| |  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 13748722  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcact 236  Q
    |||||| |||||||| ||| || |||||||||||||| ||||||||||||||| | | |||||||||||  |||||||||||||||| ||||    
T  13748721 ctatttgtgtggggtccaggttgccacgtgtcagaatcttgtgtgggtgtaaaggatatattgccacatagggtggtacatgtatcaccact 13748630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 32315433 - 32315356
Alignment:
Q  238 ttcattttgcttcattccatgccttatttgaggccaacacacaaaataaacagctcttttcacacctagacacctctc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32315433 ttcattttgcttcattccatgccttatttgaggccaacacacaaaataaacagctcttttcacacctagacacctctc 32315356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 33242402 - 33242502
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||||| |||| || ||||||| |||||||||||||||||||| ||| |||||| ||| ||||| |||||| || ||||| |||    
T  33242402 aggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctct 33242501  T
Q  144 t 144  Q
    |    
T  33242502 t 33242502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 27441544 - 27441641
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||| ||||||||||||| || ||||||  |||||||| || |||||||| |||||||||| ||| ||||| ||||||||| ||||| ||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 27441641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 31109324 - 31109245
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttca 122  Q
    |||||||||||||| ||||||||||||| || |||| | |||| ||||||||||| | ||||||||||||||||| ||||    
T  31109324 taggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattca 31109245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 33253913 - 33254012
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||||| |||| ||  |||||  ||||||||||||||| |||||||| || ||| ||| ||||| |||||| || ||||||||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 33254012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 33242526 - 33242595
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||| |||||||||||||||||  |||||||||||||||| ||  |||||||||||| |||||    
T  33242526 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 33242595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 27441665 - 27441737
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtg-gtacatgtatcatcactcttc 240  Q
    |||| |||||| ||||| |||||||||||  |||||||||||||||| |||| |||||||||||| ||||||||    
T  27441665 ccacatgtcaggattttatgtgggtgtaagaggtgtattgccacatg-ggtgtgtacatgtatcaccactcttc 27441737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 33254049 - 33254107
Alignment:
Q  180 attttgtgtgggtgtaaatggtgtattgccacat-gaggtggtacatgtatcatcactct 238  Q
    ||||||||||||| |||| ||||||||||||||| ||||| |||||||||||| ||||||    
T  33254049 attttgtgtgggtataaaaggtgtattgccacatggaggt-gtacatgtatcaccactct 33254107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 22880690 - 22880732
Alignment:
Q  170 acgtgtcagaattttgtgtgggtgt-aaatggtgtattgccac 211  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  22880690 acgtgtcagaattttgtgtgggtgtcaaagggtgtattgccac 22880732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 31109199 - 31109154
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacat 213  Q
    |||| |||||| |||||||||||||||||  |||||||||||||||    
T  31109199 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 31109154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 2e-79; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 36743584 - 36743390
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  36743584 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 36743485  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36743484 tctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 36743390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 45 - 238
Target Start/End: Original strand, 11582766 - 11582959
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 11582865  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||| |||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  11582866 ctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatcattactct 11582959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 29705362 - 29705549
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 29705461  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcat 232  Q
    |||||| || ||||| ||  || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  29705462 ctatttgtgcggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcat 29705549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 42197537 - 42197344
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| |||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  42197537 taggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaaccacactttatc 42197438  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcact 236  Q
    |||||||| |||||||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  42197437 ttctatttgtgtggggtccagattgccacgtgtcaaaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcact 42197344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 45397317 - 45397508
Alignment:
Q  46 gaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||  ||||||||| ||||||||||| |||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcacaaccacaatttatcttc 45397416  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  45397417 tatttgtgtgggctccagattgccacgtgtcagaattttgtgtgggtgtaaagggtgtgttgccacatg-ggtggtacatgtatcatcactct 45397508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 2166063 - 2165875
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    ||||||| |||| |||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcataaccacactttatctt 2165964  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatc 233  Q
    |||||| |||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||||||    
T  2165963 ctatttgtgtggggttcaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgtcacatgggatggtacatgtatcatc 2165875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 29801048 - 29800864
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| | |||||| ||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatcttct 29800949  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    |||||||||||||  ||||| |||| |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||    
T  29800948 atttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 29800864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 30912660 - 30912468
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||| ||||||| ||||||||| |||||||| ||| |||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaaccgcaccttatcttct 30912561  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| ||||||||  || || ||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  30912560 atttgtgtggggtctaggttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgccacatggggtggtacatgtatcatcactctt 30912468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 2546994 - 2547188
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||| ||||||| ||||||  ||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  2546994 taggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaaccacactttatc 2547093  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||| |||||| | ||  || |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  2547094 ttctatttgtgtgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtggtacatgtatcatcactc 2547188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 20148762 - 20148954
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| | |||||||||||||| |||| | ||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||| |||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacactttatcatct 20148861  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||||||| | |||||| ||||||||||||||||| |||||||||||| ||||||||||||||||  ||||||||||||||| |||||||    
T  20148862 atttatgtgggatccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggtgtggtacatgtatcaccactctt 20148954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 30660843 - 30660647
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||| ||||| | |||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||||||||    
T  30660843 aggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatcttacaaccacactttatct 30660744  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttc 240  Q
    ||||||| |||||||| ||| || ||||||||||||||||| ||||| |||||| |||||||||||||||  | || ||||||||||||||||||||    
T  30660743 tctatttgtgtggggtccaggttgccacgtgtcagaattttatgtggatgtaaagggtgtattgccacataggatgatacatgtatcatcactcttc 30660647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 42295197 - 42295386
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatcttct 42295296  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||| |||| ||  || |||| |||||||||||||||||| |||||| ||| |||||||||||  | |||||||| |||||||||||    
T  42295297 atttatgt-gggtccaagttgccacatgtcagaattttgtgtggatgtaaagggtatattgccacataggatggtacatttatcatcactc 42295386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 47 - 236
Target Start/End: Original strand, 26125637 - 26125825
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| | |||||||||||||| ||||   |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttct 26125736  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcact 236  Q
    |||||||| |||| |||||| ||||||||||||||||| || ||||||||| |||||||||||||||| |||||||||| ||||| ||||    
T  26125737 atttatgt-gggtccagattgccacgtgtcagaattttatgcgggtgtaaagggtgtattgccacatggggtggtacatatatcaccact 26125825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 3743787 - 3743963
Alignment:
Q  61 acaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggtt 160  Q
    ||||||||||||| | |  | |||| |||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  3743787 acaccctttattcatccctcccattatacaccccatatattaagtatattttgataagttcatctcacaaccacactttatcttctatttatgtagggtt 3743886  T
Q  161 cagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| ||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||||| |||||||||||    
T  3743887 cagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgctacatggggtggtacatatatcatcactc 3743963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 5754902 - 5755072
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||||| |||||||||||| | ||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||    
T  5754902 aggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaaccacactttatct 5755001  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatg 214  Q
    |||||||||||||| | ||  || |||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  5755002 tctatttatgtgggatccaagttgccacgtgttagaattttgtgtgggtgtaaagggtgtattgccccatg 5755072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 31384662 - 31384856
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    ||||||| | |||| |||||||||||||||| ||||    |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||    
T  31384662 taggaaagtattacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaaccacactttatc 31384761  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||| |||||||| ||| || | ||||||||||||||| ||||| |||||| ||| |||||||||||| |||||||||| |||||||||||    
T  31384762 ttctatttgtgtggggtccaggttgctacgtgtcagaattttatgtggatgtaaagggtatattgccacatggggtggtacatatatcatcactc 31384856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 9241594 - 9241744
Alignment:
Q  87 tacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggttcagattaccacgtgtcagaattttgt 186  Q
    ||||||| || |||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  9241594 tacaccctatatattagggatatttttgtaagttcatctcacaaccacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgt 9241693  T
Q  187 gtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||| ||| ||||| |||||||||| ||||||||||||||||||||||    
T  9241694 gtgggtgcaaagggtgtgttgccacatggggtggtacatgtatcatcactc 9241744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 45 - 239
Target Start/End: Original strand, 1375542 - 1375736
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    ||||||| |||| |||||||| ||||||| ||||||  |||||||||||||| |||||||||||||||| ||| || || ||||||| ||||||||||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaactacactttatctt 1375641  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||| ||||| ||||||||| |||||||| ||||| |||||||||||||||   ||||||| |||||  |||||||||||||||| |||||||    
T  1375642 ctatttgtgtggagttcagattgccacgtgttagaatcttgtgtgggtgtaaagaatgtattgtcacatagggtggtacatgtatcaccactctt 1375736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 40528737 - 40528542
Alignment:
Q  43 taggaaaatgttacgtgaacacccttt-attcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttat 141  Q
    |||||||||  ||| |||||||||||| ||||  | ||| ||||||||||||||| ||||||||| |||||||||| || || ||||||||||||||| |    
T  40528737 taggaaaataatacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttgataaatttatctcacaaccacactttct 40528638  T
Q  142 cttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||||| |||||||||||  ||  ||| ||||| |||||||||||| |||||||| | ||||| |||||||||  | |||||||||| |||||    
T  40528637 cttctatttgtgtggggttcaagttgtcacatgtcataattttgtgtggatgtaaatgatatattgtcacatgagggtgcacatgtatcaccactc 40528542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 42699259 - 42699353
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttat 141  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||  |||||||| |||||||||  ||||||||| |||||||||||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaaccacactttat 42699353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 35181515 - 35181615
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || ||||||  ||||||||||||||| |||||||| |||||| ||| ||||| ||||||||| ||||| |||    
T  35181515 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 35181614  T
Q  144 t 144  Q
    |    
T  35181615 t 35181615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 34304787 - 34304887
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||| |||||| || ||||||  ||||||||||||||| |||||||| |||||| ||| ||||| ||||||||| ||||| |||    
T  34304787 aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 34304886  T
Q  144 t 144  Q
    |    
T  34304887 t 34304887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 18066820 - 18066719
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||||||||| || ||||    |||||||| |||||||||||||||||||||  ||| ||||| ||||||||| ||||| ||    
T  18066820 taggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctc 18066721  T
Q  143 tt 144  Q
    ||    
T  18066720 tt 18066719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 33630091 - 33629994
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    ||||||||||  |||||||||||| || ||||||||||||||||||| ||| |||||||| |||||  ||| ||||| ||||||| | ||||| ||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctctt 33629994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 16603728 - 16603633
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactt 138  Q
    |||||||||||||| || |||||||||| || ||||||| ||| ||||||||||| ||||  || |||||| ||| ||||| ||||||||| ||||    
T  16603728 taggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatactt 16603633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 35181639 - 35181709
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||| |||||| |||||||||||||||||  ||||||||||||||||| |  |||||||||||| ||||||    
T  35181639 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgtatcaccactct 35181709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 34304911 - 34304981
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||| ||||||| |||||||||  |||||||||||||||| ||| |||||||||||| |||||||    
T  34304911 ccacatgtcaggattttgtttgggtgtaagaggtgtattgccacatggggt-gtacatgtatcaccactctt 34304981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 16358933 - 16358839
Alignment:
Q  46 gaaaatgttacgt-gaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacacttt 139  Q
    ||||||||||| | ||| |||||||| || ||||||  |||||||| |||||| |||| | |||||||||||| ||||| ||||||||| |||||    
T  16358933 gaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatacttt 16358839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 10678129 - 10678060
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||| |||||||||||||||||  | |||||||||||||| ||  |||||||||||| |||||    
T  10678129 ccacatgtcaggattttgtgtgggtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 10678060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 28977146 - 28977183
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctc 82  Q
    |||||||||||| |||||||||||||||||||||||||    
T  28977146 ggaaaatgttacatgaacaccctttattcctacacctc 28977183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 14547990 - 14547948
Alignment:
Q  170 acgtgtcagaattttgtgtgggtgt-aaatggtgtattgccac 211  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  14547990 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgccac 14547948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 33629970 - 33629901
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| ||||| |||||||||| |||||||  |||||||||||||||| ||  |||||| ||||| |||||    
T  33629970 ccacatgtcaaaattttgtgtaggtgtaagaggtgtattgccacatgggggtgtacatatatcaccactc 33629901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 1e-77; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 1771367 - 1771172
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  1771367 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaaccacattttatct 1771268  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||||||||||||| ||  || |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  1771267 tctatttatgtggggtccaagttgccacgtctcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactctt 1771172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 45 - 239
Target Start/End: Original strand, 27550309 - 27550503
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||| ||||||  ||||||||||| |||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaaccacactttatctt 27550408  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||||||||||| ||| || ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27550409 ctatttatgtggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactctt 27550503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 44 - 241
Target Start/End: Original strand, 27864563 - 27864760
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| | |||||| ||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |    
T  27864563 aggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttattt 27864662  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttca 241  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||| |||||||||    
T  27864663 tctatttatgtggggttcagattaccacatgtcagaattttatgtggatgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttca 27864760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 25051692 - 25051885
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    |||||||||| || ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||||    
T  25051692 aggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcacaatcacactttatct 25051791  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||||||||||| ||  || ||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||    
T  25051792 tctatttatgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaatgatgtattgccacgtggggtggtacatgtatcatcactc 25051885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 33703140 - 33703333
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  33703140 aggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 33703239  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||| || ||| | ||  || |||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  33703240 tctatttgtgcgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccatatggggtggtacatgtatcatcactc 33703333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 35017733 - 35017924
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgtat-agggatattttggtaagttcatctcacaaccacactttatctt 35017831  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| |||||||| ||  || ||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||||||||||||||||    
T  35017832 ctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaaagatgtattgccacatggggtggtacatgtatcatcactc 35017924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 28982923 - 28982728
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||| |||||||  |||||||| ||||| |||||||||||||||| ||||||||| |||||||| ||||||||||    
T  28982923 aggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaaccgcactttatct 28982824  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||| |||||||| ||  || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  28982823 tctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactctt 28982728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 23035979 - 23036173
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||  ||||||||||||||||  ||||||||||| || |||||||||||||||  ||||||||| |||||||||||||||||||    
T  23035979 aggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaaccacactttatct 23036078  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||||||||||||| ||| || |||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||    
T  23036079 tctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaaggatgtgttgccacatggggtggtacatgtatcatcactct 23036173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 55966447 - 55966252
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| | |||||||||||||| |||| | ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  55966447 aggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaaccacaatttatct 55966348  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||||||||||||  ||||| |||| |||||||||||| |||||||||||| ||||||||||||||||  ||||||||||||||| |||||||    
T  55966347 tctatttatgtggggtctagattgccacctgtcagaattttatgtgggtgtaaagggtgtattgccacatggagtggtacatgtatcaccactctt 55966252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 27893940 - 27893750
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| | |||||| ||||||| |||| | |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatcttct 27893841  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||||||||  ||||| |||| |||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  27893840 atttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 27893750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 43 - 231
Target Start/End: Complemental strand, 48463552 - 48463364
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| | |||||| ||||||| ||||  |||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||     
T  48463552 taggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactttatt 48463453  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||   |||||||||||||||    
T  48463452 ttctatttatgtggggttcagattaccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatagagtggtacatgtatca 48463364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 31680904 - 31681095
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||||| |||||| ||||||| ||||   ||||||||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcacaaccacactttatcttct 31681003  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||| | || ||||||||||| ||||||    
T  31681004 atttatgtggggtttagattgccacgtgtcagaattttatgtaggtgtaaagggtgtattgccacatgggatgctacatgtatcaccactct 31681095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 43514784 - 43514594
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||  |||||||||||| ||||||| ||||||||| |||||||||||| |||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaaccacaccttatcttct 43514685  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| ||||||||  || || ||||||||||||||||| ||||| ||||||  ||||||||||||||| ||||||||||||||||||||||    
T  43514684 atttgtgtggggtctaggttgccacgtgtcagaattttttgtggatgtaaagagtgtattgccacatggggtggtacatgtatcatcactc 43514594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 48 - 237
Target Start/End: Complemental strand, 23204875 - 23204686
Alignment:
Q  48 aaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttcta 147  Q
    ||||||||| ||||||| ||||||||||||| | ||||||||| || ||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttcatgtcacaaccacactttatcttcta 23204776  T
Q  148 tttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||||||| ||| || |||| |||||||||||| |||||||||||| | | |||||||||||| | |||||| |||||||||||||    
T  23204775 tttatgtggggtccaggttgccacatgtcagaattttatgtgggtgtaaaggatatattgccacatgggatggtacgtgtatcatcactc 23204686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 43949900 - 43949709
Alignment:
Q  47 aaaatgttacgtgaacacccttt-attcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    |||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 43949801  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||| || ||| | ||   | ||||||||||||||||||| ||||| |||| |||||||||||| ||  ||||||||||||||||||||||    
T  43949800 tatttgtgcgggatccaatatgccacgtgtcagaattttgtatgggtataaagggtgtattgccaaatagggtggtacatgtatcatcactc 43949709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 12496956 - 12497148
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||| ||||||||| | |||| |||||||||||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatctt 12497055  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| |||| ||||||  || |||||||| |||||||||||||||||||||  |||||||| |||||| |||||| |||||||||| ||||    
T  12497056 ctatttgtgtgaggttcaatttgccacgtgttagaattttgtgtgggtgtaaaacgtgtattgtcacatggggtggtgcatgtatcattactc 12497148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 43735744 - 43735936
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    ||||| |||| |||||| |||||||||||||| |||||| ||||  ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatattttgataagttcatctcacaatcacactttatcttct 43735843  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||| | ||  ||  |||||||||||||||| ||||| |||||| ||||||||||||| || ||||||||||||||||||||||||    
T  43735844 atttgtgtgggatccaagttgtcacgtgtcagaattttatgtggatgtaaagggtgtattgccacgtggggtggtacatgtatcatcactctt 43735936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 27316813 - 27316619
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||   ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||    
T  27316813 ggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcataaccacactttatctt 27316714  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaa-ttttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||||| ||| || ||  || ||||||||||||| |||||||||| |||||| ||||||||| |||||| | || || |||||||||||||||    
T  27316713 ctatttatttggagtccaagttgccacgtgtcagaatttttgtgtggatgtaaagggtgtattgtcacatgggatgataaatgtatcatcactct 27316619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 39631102 - 39631275
Alignment:
Q  47 aaaatgttacgtgaacacccttt-attcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    |||||| ||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 39631201  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtg 219  Q
    ||||| |||||||||||   |  ||||||||||||||||||||||||||||| | ||||||| |||||| ||||    
T  39631202 tatttgtgtggggttcaatatgtcacgtgtcagaattttgtgtgggtgtaaaggatgtattgtcacatggggtg 39631275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 28988472 - 28988666
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||| ||||| ||| ||||||||||| |||    
T  28988472 aggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttctct 28988571  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||| |||||||| ||| || |||  |||||||||||||| || | ||||  ||||||||| |||||||||  |||||||||||| |||||||    
T  28988572 tctatttgtgtggggtccaggttgccatatgtcagaattttgtatgag-gtaaggggtgtattgtcacatgagggtgtacatgtatcaccactctt 28988666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 46 - 206
Target Start/End: Original strand, 41878407 - 41878567
Alignment:
Q  46 gaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||||||| ||  ||||||||||||||||||||||||| ||||||||| || || |||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaaccaaaccttctcttc 41878506  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtatt 206  Q
    ||||| |||||||| ||||||  |||||||||||||||||||| ||||||||  |||||||    
T  41878507 tatttgtgtggggtccagattgtcacgtgtcagaattttgtgttggtgtaaagagtgtatt 41878567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 87 - 237
Target Start/End: Complemental strand, 51512323 - 51512173
Alignment:
Q  87 tacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggttcagattaccacgtgtcagaattttgt 186  Q
    ||||||||||||||||| ||||||||| ||||||||| | | |||||||||||||||| ||||| |||||||| ||| || |||||||||||||||||||    
T  51512323 tacaccccatgtattagagatattttggtaagttcatcttataaccacactttatcttttatttgtgtggggtccaggttgccacgtgtcagaattttgt 51512224  T
Q  187 gtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| | || | ||||||||||| || ||||||||||||||||||||||    
T  51512223 gtgggtattaaagatgtattgccacgtggggtggtacatgtatcatcactc 51512173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 45 - 231
Target Start/End: Original strand, 41847971 - 41848157
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    ||||||||||||  ||||| ||||| |||  |||||||||||||||||||||| ||||| || ||||||  || |||||  |||||||||||||| ||||    
T  41847971 ggaaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaaccacactttctctt 41848070  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    |||||| |||||||||||||||  ||| ||||||||||||| |||| |||||  |||||||||||||||| ||  ||||||||||||    
T  41848071 ctatttgtgtggggttcagattgtcacatgtcagaattttgcgtggatgtaaggggtgtattgccacatgggggtgtacatgtatca 41848157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 21687004 - 21687205
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| |||||| ||||||||  |||||| |||| |||| |  |||||||||  |||||||  ||||||||| ||| ||||| ||||||||    
T  21687004 taggaaaatgttacatgaacatcctttatttttacaccccattatacatcttatgtattagaaatattttagtaagttcatctcataaccatactttatc 21687103  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttcat 242  Q
    |||||||| | ||| |||||| || ||||||||||||||||||||||  ||||||   |||||||||||||  | |||||||| ||||||||||||| ||    
T  21687104 ttctatttgtctggagttcaggttgccacgtgtcagaattttgtgtgaatgtaaagaatgtattgccacataggttggtacatatatcatcactcttaat 21687203  T
Q  243 tt 244  Q
    ||    
T  21687204 tt 21687205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 45490413 - 45490227
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||||  ||||||  |||| |  |||||||||| ||||||||||||||| |||  ||| ||||| ||||||||||||||||||||    
T  45490413 ggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaaccacactttatctt 45490314  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    |||||| |  ||| | ||| || |||||||||||||| ||||||||||||||||| | |||||||||||  |||  |||||||||||    
T  45490313 ctatttgtacgggatccaggttgccacgtgtcagaatcttgtgtgggtgtaaatgatatattgccacatagggtactacatgtatca 45490227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 46412557 - 46412417
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    ||||||||||||||||||| ||||||||||||| ||||| |          |||||| ||||||||| ||||||| | ||||||||||||||||||||||    
T  46412557 aaaatgttacgtgaacaccttttattcctacacttcattat----------tattagagatattttggtaagttcttctcacaaccacactttatcttct 46412468  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaa 197  Q
    |||||||||||||| | ||| ||||||||||||||||||||| | ||||||    
T  46412467 atttatgtggggtttaaattgccacgtgtcagaattttgtgtagatgtaaa 46412417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 41327641 - 41327457
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |  |||||||||||||  ||||| |||||||||||  ||| | || ||| |||||| ||| ||||| ||||| ||||||||| |||||     
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctcttca 41327542  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    |||| |||||||| ||| || |||| ||| |||||||| |||| ||||||  |||||||||||| || | |  ||||||||||||    
T  41327541 atttgtgtggggtccaggttgccacatgttagaattttttgtgagtgtaaggggtgtattgccagattaagatgtacatgtatca 41327457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 17619252 - 17619153
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||||| |||| || ||||||  ||||||||||||||| |||| |||||||||| ||| ||||| ||||||||| ||||| ||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 17619153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 711959 - 712059
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || ||||||  ||||||||||| ||| |||| |||||||||| ||| ||||| |||||| || ||||| |||    
T  711959 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctct 712058  T
Q  144 t 144  Q
    |    
T  712059 t 712059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 55272476 - 55272377
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||| |||||| || |||||   ||||||||||||||| |||| |||||||||| ||| ||||| ||||||||| ||||| ||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 55272377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 56215943 - 56215805
Alignment:
Q  99 attagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaat 198  Q
    ||||| |||||||||  || || || ||||||||||||||| ||| |||||| ||||||||  || || | |  ||||||||||||||||||||||||      
T  56215943 attagcgatattttggaaaatttatctcacaaccacactttctct-ctatttgtgtggggtctaggttgctatatgtcagaattttgtgtgggtgtaaga 56215845  T
Q  199 ggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||| ||||||||  |  |||||||||||| ||||||    
T  56215844 ggtgtatggccacatggtggtgtacatgtatcaccactct 56215805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 19880077 - 19880147
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||| |||||| |||||||||||||||||  |||||||||||||||| ||  |||||||||||| ||||||    
T  19880077 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 19880147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 3756344 - 3756279
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatatttt 112  Q
    |||||||||| ||||||||||||| || ||||||  ||||||||||||||| |||| |||||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatatttt 3756279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 32728355 - 32728456
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| |||||| |||||| || ||||||  ||||||||||||||| |||| ||| |||||  ||| ||||| |||||| || ||||| ||    
T  32728355 taggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctc 32728454  T
Q  143 tt 144  Q
    ||    
T  32728455 tt 32728456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 48435681 - 48435580
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    ||||||| |||||| |||||||| |||| ||  |||||  ||||||||||||||| |||||||| || ||| ||| ||||| |||||| || ||||||||    
T  48435681 taggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatc 48435582  T
Q  143 tt 144  Q
    ||    
T  48435581 tt 48435580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 55272353 - 55272284
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||| |||||||||||||||||  |||||||||||||||| ||  |||||||||||| |||||    
T  55272353 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 55272284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 35037007 - 35037093
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaacca 133  Q
    |||||||||| ||| |||||||||  | |||||   ||||||||||||||| |||| |||||||||| ||| ||||| |||||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaacca 35037093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 712083 - 712146
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacat-gaggtggtacatgtatca 231  Q
    |||| |||||| |||||||||||||||||  ||||||||||||||| ||||| ||||||||||||    
T  712083 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggaggt-gtacatgtatca 712146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 17619129 - 17619057
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttc 240  Q
    |||| |||||| |||||||||||||||||  ||||||||||||  || ||  |||||||||||| ||||||||    
T  17619129 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccaggtggggatgtacatgtatcaccactcttc 17619057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 35037128 - 35037195
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcact 236  Q
    |||| |||||| |||||||||||||||||  ||||||||||||||||  || |||||||||||| ||||    
T  35037128 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggagt-gtacatgtatcaccact 35037195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 960971 - 960892
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcat 123  Q
    ||||||||||||| ||||||||||||| || |||||   ||||||||||| ||  |||||||| |||||| ||| |||||    
T  960971 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcat 960892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 32728492 - 32728557
Alignment:
Q  180 attttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttcatttt 245  Q
    ||||| |||| ||||||  |||||||||||||||| ||  |||||||||||| ||||||| |||||    
T  32728492 attttttgtgcgtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactctttatttt 32728557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 48435556 - 48435487
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||| |||||||||||||||||  | ||||||| |||||| ||  |||||||||||| |||||    
T  48435556 ccacatgtcaggattttgtgtgggtgtaagagatgtattgtcacatgggggtgtacatgtatcaccactc 48435487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 50526200 - 50526245
Alignment:
Q  167 accacgtgtcagaattttgtgtgggtgt-aaatggtgtattgccac 211  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  50526200 accacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccac 50526245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 2e-76; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 24001112 - 24000919
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 24001013  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||| |||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  24001012 ctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatcattactct 24000919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 42538531 - 42538339
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42538432  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| |||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  42538431 ctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatcattactc 42538339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 44417032 - 44416841
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||| | |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatcttct 44416933  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||| |||||||| ||  || ||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  44416932 atttgtgtggggtccaagttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactct 44416841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 5811024 - 5810830
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||    
T  5811024 ggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcacaaccacactttatctt 5810925  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||| |||||||| ||  || |||| ||||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  5810924 ctatttgtgtggggtccaagttgccacatgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactctt 5810830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 43343722 - 43343532
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||| | |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatcttct 43343623  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||||| ||  || ||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  43343622 atttgtgtggggtccaagttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactc 43343532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 35069719 - 35069915
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  35069719 taggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatc 35069818  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||||||||| ||| ||  || ||||||||||||||||||||| | |||||| | | |||||||||||  | ||||||||||||||||||||||    
T  35069819 ttctatttatgtgaggtccaagttgccacgtgtcagaattttgtgtagatgtaaaggatatattgccacataggatggtacatgtatcatcactctt 35069915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 5015394 - 5015581
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||| ||||||| ||||||  ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  5015394 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatct 5015493  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    ||||||| |||||||| ||  || |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  5015494 tctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgagtgtaaaaggtgtattgccacatggggtggtacatgtatca 5015581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 32029895 - 32029725
Alignment:
Q  67 tttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggttcagatt 166  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| ||  ||    
T  32029895 tttattcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctaacaaccacactttatcttctatttatgtggggtccaagtt 32029796  T
Q  167 accacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
     |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  32029795 gccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatgactc 32029725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 45 - 239
Target Start/End: Original strand, 45326020 - 45326214
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    ||||| |||||| | |||||| ||||||| |||| | ||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||||||    
T  45326020 ggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcacaatcacactttatctt 45326119  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||    
T  45326120 ctatttatgtggggtccagactaccacctgtcagaattttatgtgggtgtaaatggtgtattgtcacatggggtggtacatgtatcaccactctt 45326214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 45 - 238
Target Start/End: Original strand, 42972852 - 42973045
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||| |||||||||||||||  ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacattttatctt 42972951  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||| |||||||| ||  || ||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||| |||||    
T  42972952 ctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacataggatagtacatgtatcattactct 42973045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 44326180 - 44326372
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| | |||||||||||||| |||| | ||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||| |||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacactttatcatct 44326279  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||||||| | |||||| ||||||||||||||||| |||||||||||| ||||||||||||||||  ||||||||||||||| |||||||    
T  44326280 atttatgtgggatccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggtgtggtacatgtatcaccactctt 44326372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 16180454 - 16180263
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| | |||||| |||||||||||||| |||||||||||||| ||||||   |||||||| ||| ||||| ||||||||||||||||||||||    
T  16180454 aaaatgttacatcaacaccatttattcctacacc-cattgtacaccccacgtattataaatattttggtaaattcatctcacaaccacactttatcttct 16180356  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||||| ||| || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  16180355 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactctt 16180263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 48 - 237
Target Start/End: Complemental strand, 26898499 - 26898310
Alignment:
Q  48 aaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttcta 147  Q
    ||||||||| |||||||| ||||||| ||||||  ||||||||  ||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaaccacactttatattcta 26898400  T
Q  148 tttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||| |||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||||  | |||||||||||||| |||||    
T  26898399 tttgtgtggggtccaggttaccacgtgtcagaattttatgtgggtgtaaaaggtgtattgccacataggatggtacatgtatcaccactc 26898310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 27393344 - 27393171
Alignment:
Q  61 acaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggtt 160  Q
    |||||||||||||||||| |  ||||||||| | ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||     
T  27393344 acaccctttattcctacatcctattgtacactctatgtattagggatatttttgtaagttcatctcacaaccacactttatcttctatttatgtggggtc 27393245  T
Q  161 cagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatca 234  Q
    ||| || || | |||||||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||    
T  27393244 caggttgcctcatgtcagaattttatgtgggtgtaaaggatgtattgccacatggggtggtacatgtatcatca 27393171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 41861673 - 41861868
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtatta--gggatattttgataagttcatttcacaaccacactttat 141  Q
    ||||||||||||| |||||||||||||||| ||||||  ||| ||||||| ||||||||  | ||||||||| |||||| || |||||||||||||||||    
T  41861673 aggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtttatctcacaaccacactttat 41861772  T
Q  142 cttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||||| | |||||| ||| || ||||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  41861773 cttctatttgtatggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggagtggtacatgtatcaccactc 41861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 10573751 - 10573941
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| | |||||||||||||| |||| |  |||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaaccacactttatcttct 10573850  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||||||||  ||||| |||| | |||||||||| |||||||||||| | | ||||| |||||| |||||||||||||||| |||||    
T  10573851 atttatgtggggtcaagattgccacatatcagaattttatgtgggtgtaaaggatatattgtcacatgcggtggtacatgtatcaccactc 10573941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 43317441 - 43317635
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||| || |||  |||||||||||||||||| ||||| |||||| |||||||  ||    
T  43317441 taggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaatcacacttactc 43317540  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||| ||||||||  ||||| |||| ||||||||||||||||||||||||  ||||||||||||||  |||  |||||||||||| |||||    
T  43317541 ttctatttgtgtggggtctagattgccacatgtcagaattttgtgtgggtgtaaggggtgtattgccacacaagggtgtacatgtatcaccactc 43317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 4638297 - 4638106
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||||| ||||||| |||||   |||||||||||||| ||||| |||||||||| ||||||||| ||||||||| ||||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatcttct 4638198  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||| ||||||||  || ||||||||||||||||| |||| ||| |||||| ||||||||| ||| |  |||||||||||||||| ||||||    
T  4638197 atttgtgtggggtctaggttaccacgtgtcagaatcttgtatggatgtaaagggtgtattgtcacgtagggtggtacatgtatcaccactct 4638106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 43 - 231
Target Start/End: Complemental strand, 5194333 - 5194145
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||| ||| |||||||||||||| ||||| |||||| |||||||  ||    
T  5194333 taggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcacaatcacacttactc 5194234  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    |||||||| ||||||||  ||||| |||| ||||| ||||||||||||||||||  | ||||||||||||  |||  ||||||||||||    
T  5194233 ttctatttgtgtggggtctagattgccacatgtcaaaattttgtgtgggtgtaagggttgtattgccacacaagggtgtacatgtatca 5194145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 9216300 - 9216495
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||||||||||||||| | |  ||||||||||| ||| ||||| ||||||||| ||||||||| ||||||||||| ||||||    
T  9216300 taggaaaatgttacatgaacaccctttattcctatatcctattgtacaccc-atgcattagagatattttggtaagttcatctcacaaccacattttatc 9216398  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||||| ||||||||| |  || || | |||||||||||||||||| |||||| ||||||||| |||||| ||||||| || ||||||| |||||    
T  9216399 ttctatttgtgtggggtttaagttgccgcatgtcagaattttgtgtggatgtaaaaggtgtattgtcacatggggtggtatatatatcatccctctt 9216495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 38160656 - 38160505
Alignment:
Q  68 ttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggttcagatta 167  Q
    |||||| |||||  |||||||||||||||||||||||||||||||  ||| ||||| ||||||| ||||||||||||||||||||||||||| ||  ||     
T  38160656 ttattcttacactccattgtacaccccatgtattagggatattttagtaacttcatctcacaactacactttatcttctatttatgtggggtccaagttg 38160557  T
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtg 219  Q
    |||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  38160556 ccacgtgtcagaattttgtgtgggtgtaaggggtgtattgccacatggggtg 38160505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 24280698 - 24280535
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    ||||||||||||||||||||||||||||||| ||||||  ||| |||| |||||| | |||  |||||||| ||| ||||| |||||| |||||||| ||    
T  24280698 taggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaatcacactttctc 24280599  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtatt 206  Q
    |||||||| |||||||| ||  || |||  | ||||||||||||| | ||||||  ||||||||    
T  24280598 ttctatttgtgtggggtccaagttgccatatatcagaattttgtgcgagtgtaagaggtgtatt 24280535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 47279744 - 47279630
Alignment:
Q  125 tcacaaccacactttatcttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtaca 224  Q
    |||||||||||||||||||||||||||| | || | ||||||||||| | |||||||||| ||||||| |||| ||||||||| || ||| | |||||||    
T  47279744 tcacaaccacactttatcttctatttatataggatccagattaccacatatcagaattttatgtgggtataaagggtgtattgtcagatgggatggtaca 47279645  T
Q  225 tgtatcatcactctt 239  Q
    ||||||| |||||||    
T  47279644 tgtatcaccactctt 47279630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 31408732 - 31408634
Alignment:
Q  46 gaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    ||||||||||| ||||||||||||| || |||||   |||||||| |||||| |||| |||||||||| ||| ||||||||||||||| ||||| ||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctctt 31408634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 40236918 - 40237007
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaacca 133  Q
    ||||||||||||| ||||||||||||| || |||| |  ||||||||||||||| |||||||| |||||| ||| ||||| |||||||||    
T  40236918 aggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaacca 40237007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 31513287 - 31513386
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||| ||||| || ||||||  |||||| |||||||| |||| |||||||||| ||| ||||| ||||||||| ||||| ||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 31513386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 40237042 - 40237112
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||| |||||| |||||||||||||||||  |||||||||||||||| ||  |||||||||||| ||||||    
T  40237042 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 40237112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 38160508 - 38160469
Alignment:
Q  199 ggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  38160508 ggtgtattgccacatgagatggtacatgtatcatcactct 38160469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 39998408 - 39998475
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatatttt 112  Q
    |||||||||||| |||||||  |||| || |||| |  ||||||||||||||||||||||||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 27535332 - 27535232
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || |||||   ||||||||| |||||| |||  || |||||| ||| ||||| ||||||| | ||||| |||    
T  27535332 aggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctct 27535233  T
Q  144 t 144  Q
    |    
T  27535232 t 27535232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 35522946 - 35522902
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtg-taaatggtgtattgccac 211  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  35522946 ccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccac 35522902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 31408610 - 31408539
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||| ||||| |||||||||||  ||||||||| |||||| ||  |||||||||||| |||||||    
T  31408610 ccacatgtcaggattttatgtgggtgtaagaggtgtattgtcacatgggggtgtacatgtatcaccactctt 31408539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 31513410 - 31513481
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||| ||||||||| | |||||  ||||||||||||||| |||  |||||||||||| |||||||    
T  31513410 ccacatgtcaggattttgtgtagatgtaagaggtgtattgccacataagggtgtacatgtatcaccactctt 31513481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 38160696 - 38160661
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctaca 78  Q
    |||||||||||||| |||||||||||||||||||||    
T  38160696 taggaaaatgttacatgaacaccctttattcctaca 38160661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 33384869 - 33384970
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctc-attgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    ||||||||||||| |||||| | |||| || |||||| | |||||| || ||||| |||||||| |||||| ||| ||||| |||||| || ||||| ||    
T  33384869 aggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctc 33384968  T
Q  143 tt 144  Q
    ||    
T  33384969 tt 33384970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 2e-76; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 2614749 - 2614556
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 2614650  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||| |||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  2614649 ctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatcattactct 2614556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 41334763 - 41334571
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 41334664  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| |||||||| ||| || ||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  41334663 ctatttgtgtggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 41334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 18033981 - 18034174
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  18033981 aggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatct 18034080  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||| |||||||| ||| || ||||||||||||||||| | |||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  18034081 tctatttgtgtggggtccaggttgccacgtgtcagaattttatatgggtgtaaagggtgtattgccatatggggtggtacatgtatcatcactc 18034174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 38470578 - 38470765
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| | |||||||||||||| ||||   ||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||    
T  38470578 aggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcacaatcacactttatct 38470677  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    |||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||    
T  38470678 tctatttatgtggggtccagattaccacgtatcagaattttatgtgggtgtaaagggtgtattgccatatgaggtggtacatgtatca 38470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 5256997 - 5257188
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| | |||||| ||||||| |||| | |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatcttct 5257096  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||||||||||  ||||| |||| |||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  5257097 atttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 5257188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 7617132 - 7617327
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||||||||||||| |||||  |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  7617132 aggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 7617231  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||||||||||| |  |  ||  ||| |||||||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  7617232 tctatttatgtgggatctaagttgtcacatgtcagaattttgtgttggtgtaaaaggtgtattgccacatggggtgatacatgtatcatcactctt 7617327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 22512305 - 22512472
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 22512404  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccaca 212  Q
    |||||| |||||||| ||  || ||||||||||||||||||||||| |||||| ||||||||||||||    
T  22512405 ctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccaca 22512472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 33801468 - 33801662
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||| |||||||| ||||||| |||||||||| ||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  33801468 aggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaaccacactttatct 33801567  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||| |||||| | ||  || ||||||||||||||||||||||||||||||  ||||||||||||||| |  ||||||| ||||||||||||    
T  33801568 tctatttgtgtgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgccacatgggaaggtacatatatcatcactct 33801662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 25915085 - 25914902
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  |||||||  || |||||| ||| ||        ||||||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtattaga-atatttttgtaggttcatctcataa--------tatcttct 25914995  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25914994 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 25914902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 39122534 - 39122366
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    ||||||| | |||| |||||||| ||||||| |||| || |||  |||||| |||||||||| |||||||| ||| ||||| ||||||| ||||||||||    
T  39122534 taggaaactattacatgaacaccttttattcatacatctaattagacaccc-atgtattaggaatattttggtaaattcatctcacaactacactttatc 39122436  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccaca 212  Q
    |||||||| ||||||||| || || |||| ||||||||| |||||||| |||||||| | ||||| ||||    
T  39122435 ttctatttgtgtggggtttaggttgccacatgtcagaatcttgtgtggatgtaaatgatatattgtcaca 39122366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 39122369 - 39122262
Alignment:
Q  132 cacactttatcttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    ||||||||||||||||||| ||||||||| || || |||| ||||||||| |||||||| |||||||| | ||||| |||||| ||||||||||||||||    
T  39122369 cacactttatcttctatttgtgtggggtttaggttgccacatgtcagaatcttgtgtggatgtaaatgatatattgtcacatggggtggtacatgtatca 39122270  T
Q  232 tcactctt 239  Q
     |||||||    
T  39122269 ccactctt 39122262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 32473494 - 32473395
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||| || ||||||| |||||||||| |||| ||||||||||||||| ||| ||||| ||||||||| ||||| ||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctt 32473395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 33855143 - 33855068
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagtt 120  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaagtt 33855068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 17208072 - 17208173
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||||||||||||||||| || ||||| | ||||||||||||||| |||| ||| |||||| ||| ||||| ||||||||| ||||| ||    
T  17208072 taggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctc 17208171  T
Q  143 tt 144  Q
    ||    
T  17208172 tt 17208173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 30622696 - 30622627
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| ||||| ||||||||||||||||||  |||||||||||||||| ||  |||||||||||| |||||    
T  30622696 ccacatgtcaaaattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 30622627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 32473371 - 32473303
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatg-aggtggtacatgtatcatcact 236  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||| ||||| ||||||||||| ||||    
T  32473371 ccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatggaggtg-tacatgtatcaccact 32473303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 30622819 - 30622720
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||| |||||| || ||||||  |||||| | |||||| |||| |||||||||| ||| || || ||||||||| ||||| |||    
T  30622819 aggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctcacaaccatactttctct 30622721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 6679769 - 6679724
Alignment:
Q  167 accacgtgtcagaattttgtgtgggtgt-aaatggtgtattgccac 211  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  6679769 accacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccac 6679724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 28177846 - 28177801
Alignment:
Q  167 accacgtgtcagaattttgtgtgggtgt-aaatggtgtattgccac 211  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  28177846 accacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccac 28177801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 2e-76; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 24688503 - 24688310
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||| ||||||  |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  24688503 aggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 24688404  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  24688403 tctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggggtaaatggtgtattgccacatggggtggtacatgtatcatcactc 24688310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 46941052 - 46941246
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  46941052 aggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 46941151  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||| |||||||| ||  || ||||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  46941152 tctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagagtgtattgccacatggggtggtacatgtatcatcactct 46941246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 40808864 - 40809057
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  40808864 aggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 40808963  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||| |||||||| ||| || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||    
T  40808964 tctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactc 40809057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 42100688 - 42100880
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacattttatctt 42100787  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
     ||||| ||||| |||||| || ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  42100788 ttatttgtgtggagttcaggttgccacgtgtcagaattttatgtgggtgtaaagggtgcattgccacatgaggtggtacatgtatgatcactc 42100880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 42394518 - 42394319
Alignment:
Q  46 gaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    ||||||||||| |||||||||||||||||||||   |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 42394419  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttcatttt 245  Q
    ||||| |||||||| |||||| |||||||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  42394418 tatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactctttatttt 42394319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 47191126 - 47190932
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  47191126 aggaaaatgttacatgaacaccctttattcctacacctcattgtacaccc-atgtattagagatattttgataagttcatctcacaaccacactttatct 47191028  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||| |||||||| ||  ||||||| ||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||    
T  47191027 tctatttgtgtggggtccaagttaccacatgtcagaattttgtgtgggtgtaaagggtgtattgccacatggaatggtacatgtatcatcactctt 47190932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 54237097 - 54237288
Alignment:
Q  46 gaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 54237196  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||| |||||||| |||||| |||||||||||||| |||| |||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  54237197 tatttgtgtggggtccagattgccacgtgtcagaatattgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactc 54237288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 25413679 - 25413874
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||  ||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  25413679 taggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaaccacactttatc 25413778  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||    
T  25413779 ttctatttgtgtggggtccaggttaccacgtgtcagagttttgtgtgggtgtaaagggtgtattgtcatatggggtggtacatgtatcatcactct 25413874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 45127028 - 45126836
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| | |||||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatttt 45126929  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||||||||||| ||||||||||| || ||||||||| |||||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  45126928 ctatttatgtggggtccagattaccacatgccagaattttatgtgggtgtaaagggtgtattgccacatggagtggtacatgtatcaccactc 45126836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 54246249 - 54246053
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||  ||||||||| |||||||||||||||||||    
T  54246249 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaaccacactttatct 54246150  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttc 240  Q
    ||||||| |||||||| ||| || |||| |||||||||||| ||||||||||||   |||||||||||||| |||||||||||||||||||||||||    
T  54246149 tctatttgtgtggggtccaggttgccacatgtcagaattttatgtgggtgtaaagaatgtattgccacatggggtggtacatgtatcatcactcttc 54246053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 53581956 - 53581766
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| ||||||| |||||||| |||||  ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaaccacactttatcttct 53581857  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| ||||||||||||    
T  53581856 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtggtacaggtatcatcactc 53581766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 45 - 239
Target Start/End: Original strand, 36150130 - 36150324
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||| ||||||||||| |||||| |||| ||||||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaaccacactttatctt 36150229  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||| ||||| || ||| || ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||||    
T  36150230 ctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 36150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 40480750 - 40480941
Alignment:
Q  46 gaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    ||||||||||| |||||||||||||||| ||  || ||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 40480849  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||| ||| |||| ||| || |||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||    
T  40480850 tatttgtgtagggtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccgcatggggtgatacatgtatcatcactc 40480941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 52629870 - 52630021
Alignment:
Q  87 tacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggttcagattaccacgtgtcagaattttgt 186  Q
    ||||||| |||||||| |||||||||  ||||||||| |||||||||||||||||||||||||||||| |||| ||| || | |||||||||||||||||    
T  52629870 tacaccctatgtattaaggatatttttgtaagttcatctcacaaccacactttatcttctatttatgtagggtccaggttgctacgtgtcagaattttgt 52629969  T
Q  187 gtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  52629970 gtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactct 52630021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 1078229 - 1078412
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||| |||||||  || |||||| ||||||        ||||||||    
T  1078229 aaaatgttacatgaacaccctttattcctgcacctcattgtacacctaatgtattagg-atatttttgtaggttcatctcacaa--------tatcttct 1078319  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| ||||| |||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  1078320 atttgtgtggagttcaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatgaggtggtacatgtatcatcactctt 1078412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 53273785 - 53273599
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||  |||||| | |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||||    
T  53273785 aggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactttatct 53273686  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    | |||||||||||| | ||| ||||||||| ||||||||||||||          |||||||||||||||| | ||||||||||||||||||||||    
T  53273685 tttatttatgtgggatccaggttaccacgtatcagaattttgtgt---------aggtgtattgccacatgggatggtacatgtatcatcactctt 53273599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 27748565 - 27748746
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||||| ||||||| ||||||||||| ||||||  ||||||||||||||||||| ||||||||| ||||||| | ||||||||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaacaatactttatcttct 27748664  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||||| ||| || |||| ||||||||||||||||          |||||||||||||||| |||||||||||||||| |||||    
T  27748665 atttgtgtggggtccaggttgccacatgtcagaattttgtgt---------cggtgtattgccacatggggtggtacatgtatcaccactc 27748746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 11064821 - 11064628
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||  |||||| | ||||||| ||||||||||||||||||| |||  |||| ||||||||||| | ||||| ||| || |||||||  |||    
T  11064821 aggaaaatgtta--tgaacatcatttattcatacacctcattgtacaccctatgctttagagatattttgattaattcatctcataatcacacttactct 11064724  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||| ||||||||  |||||||||| ||||| ||||||||||||||||||  ||||||||| ||||  ||   |||||||||||| |||||||    
T  11064723 tctatttgtgtggggtctagattaccacatgtcaaaattttgtgtgggtgtaaggggtgtattgtcacacaagagtgtacatgtatcaccactctt 11064628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 51249323 - 51249449
Alignment:
Q  60 aacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggt 159  Q
    ||||||||||||||   || | |||| |||||| |||| |||| |||||||||| ||| ||||| ||||||||||||||| |||||||||| |||||| |    
T  51249323 aacaccctttattcacccaacccattatacacctcatgcattaaggatattttggtaaattcatctcacaaccacactttctcttctatttgtgtgggat 51249422  T
Q  160 tcagattaccacgtgtcagaattttgt 186  Q
     |||||| |||| ||||||||||||||    
T  51249423 ccagattgccacatgtcagaattttgt 51249449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 4190366 - 4190266
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || ||||||  ||||||||||  ||||||||| ||||||||| ||| ||||| ||||||||| ||||| |||    
T  4190366 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctct 4190267  T
Q  144 t 144  Q
    |    
T  4190266 t 4190266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 9434123 - 9434223
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || |||||   ||||||||||||||| |||||||| |||||| ||| ||||| ||||||||| ||||| |||    
T  9434123 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 9434222  T
Q  144 t 144  Q
    |    
T  9434223 t 9434223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 25996266 - 25996356
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaacca 133  Q
    |||||||||||||| ||||||||||||| || |||| || |||||||||||||| ||||| ||| |||||| ||| ||||| |||||||||    
T  25996266 taggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 25996356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 10457993 - 10457893
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| |||||||| |||| || ||||||  ||||||||||||||| |||| |||||||||| ||| || || ||||||||| ||||| |||    
T  10457993 aggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctct 10457894  T
Q  144 t 144  Q
    |    
T  10457893 t 10457893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 29556956 - 29556865
Alignment:
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||||||||| || |||| ||||||| |||| | ||||||||||| |||||||||||||||  ||||||||||||||| |||||||    
T  29556956 atttgtgtggggttcaggttgccacatgtcaga-ttttatatgggtgtaaattgtgtattgccacatgtagtggtacatgtatcaccactctt 29556865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 29558335 - 29558232
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    |||| |||||||  |||||||||||||||| |||| |||||||||||||| || ||||||| |||| ||| ||| ||||| |||||| |||| ||||| |    
T  29558335 aggacaatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctcacaatcacattttattt 29558236  T
Q  144 tcta 147  Q
    ||||    
T  29558235 tcta 29558232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 34791829 - 34791928
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||| || ||||||  |||||| ||| |||| |||||||| ||||| |||| ||||| ||||||||| ||||| ||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctt 34791928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 52628078 - 52627978
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||||||||||||||||| || |||| |  |||||||||| |||| |||| | |||||||| ||| ||||| |||||| || ||||| |||    
T  52628078 aggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctct 52627979  T
Q  144 t 144  Q
    |    
T  52627978 t 52627978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 19148896 - 19148950
Alignment:
Q  173 tgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgt 227  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||    
T  19148896 tgtcagaattttgtgtgggtgtaagtggtgtattgccacatgggggtgtacatgt 19148950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 9434247 - 9434316
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||| |   |||||||||||| |||||    
T  9434247 ccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatgggagtgtacatgtatcaccactc 9434316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 10457869 - 10457797
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttc 240  Q
    |||| |||||| ||||||||||| |||||  |||||||||||||||||||   ||||||||||| ||||||||    
T  10457869 ccacatgtcaggattttgtgtggatgtaagaggtgtattgccacatgagggtatacatgtatcaacactcttc 10457797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 4190242 - 4190171
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||| |||||||||||||||||  ||||||||||||||| |||   ||||||||||| |||||||    
T  4190242 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacataagggtatacatgtatcaccactctt 4190171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 51757593 - 51757692
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    ||||||| |||| | ||||||||||| || ||||||  |||||||||| |||| |||| ||| |||||  ||| ||||| ||||||||| ||||| ||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctt 51757692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 54429235 - 54429180
Alignment:
Q  175 tcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatc 230  Q
    ||||||||||||||||||||||  |||||||||||| ||| ||  |||||||||||    
T  54429235 tcagaattttgtgtgggtgtaagaggtgtattgccatatgggggtgtacatgtatc 54429180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 26141561 - 26141606
Alignment:
Q  167 accacgtgtcagaattttgtgtgggtg-taaatggtgtattgccac 211  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||    
T  26141561 accacgtgtcagatttttgtgtgggtgttaaagggtgtattgccac 26141606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 51757716 - 51757784
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||| ||| |||||||||||||  ||| |||||||||||| ||| |||||||||||| |||||    
T  51757716 ccacatgtcaggattgtgtgtgggtgtaagaggtatattgccacatggggt-gtacatgtatcaccactc 51757784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 2e-76; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 30838629 - 30838826
Alignment:
Q  42 gtaggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttat 141  Q
    ||||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  30838629 gtaggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttat 30838728  T
Q  142 cttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||||| |||||||| ||| || ||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30838729 cttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtaggtgtaaaaggtgtattgccacatggggtggtacatgtatcatcactctt 30838826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 43490499 - 43490307
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| ||||||||||||||||||||| | |||||||||| | ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataaccacactttatcttct 43490400  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  43490399 atttatgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtagcatcactctt 43490307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 19047158 - 19047357
Alignment:
Q  46 gaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    ||||||||||| |||||||||||||||||||||   |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 19047257  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttcatttt 245  Q
    ||||| |||||||| |||||| |||||||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  19047258 tatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactctttatttt 19047357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 1750414 - 1750606
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 1750513  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| |||||||| |||||| |||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||  |||||||||||    
T  1750514 ctatttgtgtggggtccagattgccacgtgtcagaattttgtgtgagtgtaaagggtgtgttgccacatggggtggtacaaatatcatcactc 1750606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 12302354 - 12302160
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  12302354 aggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatct 12302255  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||| |||||| | |||||||||||||| |||| ||||||||||||| ||||    
T  12302254 tctatttatgtggggtccaggttaccatgtgtcagaattttgtgtggatgtaaaggatgtattgccacatggggtgatacatgtatcatcgctct 12302160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 16096747 - 16096940
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaaccacactttatctt 16096846  T
Q  145 ctatttatgtggggttc-agattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||| |||||||||| || |  || |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  16096847 ctacttatgtgggggtctaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgatgtggtacatgtatcatcactc 16096940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 43335864 - 43335671
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||  |||||| | |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||||    
T  43335864 aggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaactacactttatct 43335765  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||||||||| | ||| || ||||||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||    
T  43335764 tctatttatgtgggatccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtatattgccacatggggtggtacatgtatcatcactc 43335671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 4764827 - 4764633
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| | |||||| ||||||||||||||  ||||||||||||||||||||   |||||||| ||| ||||| |||||||||||||||||||    
T  4764827 aggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaaccacactttatct 4764728  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||| |||||||| ||| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  4764727 tctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactct 4764633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 42849916 - 42849768
Alignment:
Q  87 tacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggttcagattaccacgtgtcagaattttgt 186  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||  || |||||||||||||||||||    
T  42849916 tacaccccatgtattagggatattttgataagttcatctcacaaccacactttat-ttctatttgtgtggggtccaagttgccacgtgtcagaattttgt 42849818  T
Q  187 gtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcact 236  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  42849817 gtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcact 42849768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 45 - 204
Target Start/End: Complemental strand, 13780835 - 13780676
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| | |||||  |||||||  |||||||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  13780835 ggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcacaaccacactttctctt 13780736  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgta 204  Q
    ||||||||||||||| ||| || |||| |||||||||||||| | |||||||| ||||||    
T  13780735 ctatttatgtggggtccaggttgccacatgtcagaattttgtataggtgtaaagggtgta 13780676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 34817875 - 34817682
Alignment:
Q  46 gaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||||| | || | | |||||| ||| ||||| ||||||||||||||| |||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctcttc 34817776  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    ||||| |  ||| | ||| || |||| |||||||||||||| |||||||||  || | ||||||||||| ||  ||||||||||||||||||||    
T  34817775 tatttgtacgggatccaggttgccacatgtcagaattttgtatgggtgtaaggggagcattgccacatgggggtgtacatgtatcatcactctt 34817682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 39149354 - 39149201
Alignment:
Q  83 attgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggttcagattaccacgtgtcagaatt 182  Q
    |||||||| || ||||||||| ||||||||| |||||||||  |||||| |||||||||||| ||||| ||| ||||  | |||||||||| ||| ||||    
T  39149354 attgtacatcctatgtattagagatattttggtaagttcatcccacaactacactttatcttttatttgtgt-gggtctaaattaccacgtctcataatt 39149256  T
Q  183 ttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  39149255 ttgtgtgggtgtaaaaggtgtattaccacatg-ggtggtacatgtatcatcactct 39149201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 42026765 - 42026956
Alignment:
Q  43 taggaaaatgttacgtgaacaccc--tttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacacttta 140  Q
    |||||||||||||| |||||||||  ||||||| ||||   ||||||||| |||  | |||||||||||||||  || ||||| ||||||| |||||||     
T  42026765 taggaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcacaactacactttc 42026864  T
Q  141 tcttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacat-gaggtggtacatgtatcat 232  Q
    | |||||||| ||||||||  || || | |  ||||||||||||||||||||||||  ||||||||||||||| ||||| |||||||||||||    
T  42026865 ttttctatttgtgtggggtctaggttgcaagatgtcagaattttgtgtgggtgtaaggggtgtattgccacatggaggt-gtacatgtatcat 42026956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 33229303 - 33229380
Alignment:
Q  47 aaaatgttacgtgaacacccttt-attcctacacctcattgtacaccccatgtattagggatattttgataagttcat 123  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33229303 aaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcat 33229380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 41282072 - 41281975
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||| ||||||||||||| || ||||||  ||||||||||||||| |||||||| |||||||||| ||||| ||||||||| ||||| ||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctt 41281975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 43114556 - 43114749
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || ||||||  ||||||||||||||| |||||||| |||||| ||| ||||| ||||||||| ||||| |||    
T  43114556 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 43114655  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |  || |        ||    || |||| |||||| |||||||||||||||||  |||||||||||||||||||  |||||||||||| |||||    
T  43114656 ttcatctcctctcccttttccttgccacttgtcaggattttgtgtgggtgtaagaggtgtattgccacatgagggtgtacatgtatcaccactc 43114749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 16803967 - 16804067
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || ||||||  |||||||| |||||| |||||||| |||||||||| ||||| ||||||||| ||||| |||    
T  16803967 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctct 16804066  T
Q  144 t 144  Q
    |    
T  16804067 t 16804067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 16843249 - 16843349
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || ||||||  |||||||| |||||| |||||||| |||||||||| ||||| ||||||||| ||||| |||    
T  16843249 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctct 16843348  T
Q  144 t 144  Q
    |    
T  16843349 t 16843349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 8896681 - 8896542
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| ||||||||||||||||  |||   |||||||||||| ||  | |||| |||||||| ||| ||||| |||||| |||||||| | ||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcacaatcacactttcttttct 8896582  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgt 186  Q
    |||| |||| ||||||| || |||| ||||||||||||||    
T  8896581 atttgtgtgaggttcaggttgccacatgtcagaattttgt 8896542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 12415560 - 12415461
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||| || ||||||| ||||||||||||||| |||||||| |||||| ||| || || ||||||||| ||||| ||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12415461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 12427620 - 12427521
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||| || ||||||| ||||||||||||||| |||||||| |||||| ||| || || ||||||||| ||||| ||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12427521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 11825752 - 11825655
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||| ||||||||||||| || ||||||  ||||||||||||||| |||||||| |||||| ||| ||||| |||||| || ||||| ||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctt 11825655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 18491703 - 18491798
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactt 138  Q
    |||||||||||||| ||||||||||||| || ||||||  |||||||||| |||| |||| | | |||||| ||| ||||| ||||||||| ||||    
T  18491703 taggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatactt 18491798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 34895718 - 34895647
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||| |||||||||||||||||  |||||||||||||||| ||  |||||||||||| |||||||    
T  34895718 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactctt 34895647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 11825631 - 11825562
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||| |||||||||||||||||  |||||||||||||||| ||  |||||||||||| |||||    
T  11825631 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggggatgtacatgtatcaccactc 11825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 966935 - 966835
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || ||||||  ||||||||||||||| |||| | |  ||||| ||| ||||| |||||| || ||||| |||    
T  966935 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctct 966836  T
Q  144 t 144  Q
    |    
T  966835 t 966835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 6518471 - 6518400
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatg-aggtggtacatgtatcatcactctt 239  Q
    |||| |||||| |||||||||||||||||| ||||||||| |||||| ||||| ||||||||||| |||||||    
T  6518471 ccacatgtcaggattttgtgtgggtgtaaaaggtgtattgacacatggaggtg-tacatgtatcaccactctt 6518400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 12531640 - 12531569
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatg-aggtggtacatgtatcatcactctt 239  Q
    |||| |||||| |||||||||||||||||  |||||||||||| ||| ||||| |||||||||||||||||||    
T  12531640 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccatatggaggtg-tacatgtatcatcactctt 12531569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 34895842 - 34895742
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    |||||| |||||| |||||||| |||| ||  |||||  ||||||||||||||| |||||||| || ||| ||| ||||| |||||| || |||||||||    
T  34895842 aggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatct 34895743  T
Q  144 t 144  Q
    |    
T  34895742 t 34895742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 7070418 - 7070505
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccac 134  Q
    |||||||||| |||||||||||||||| |||| | |||||||  | |||| |||| |||| |||||||||| ||||| | ||||||||    
T  7070418 aaaatgttacatgaacaccctttattcatacatcccattgtaacctccatttattggggacattttgataaattcatcttacaaccac 7070505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 18491840 - 18491899
Alignment:
Q  180 attttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||||||||||||||  |||||||||||||||| ||  |||||||||||| |||||||    
T  18491840 attttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactctt 18491899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 41281951 - 41281880
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||| |||||||||||||||||  |||||||||||| ||| ||  |||||||||||| |||||||    
T  41281951 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccatatgggggtgtacatgtatcaccactctt 41281880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 966811 - 966742
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||| |||||||||||||||||  |||||||| ||||||| ||  |||||||||||| |||||    
T  966811 ccacatgtcaggattttgtgtgggtgtaagaggtgtatttccacatggggatgtacatgtatcaccactc 966742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 4299397 - 4299328
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||| |||||||||||||||||  | ||||||||||||||| |  |||||||||||| |||||    
T  4299397 ccacatgtcaggattttgtgtgggtgtaagagatgtattgccacatgaaggtgtacatgtatcaccactc 4299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 12415432 - 12415368
Alignment:
Q  173 tgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||||||||||||| |||||  |||||||||||||||| |   |||||||||||| |||||    
T  12415432 tgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgtatcaccactc 12415368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 12427492 - 12427428
Alignment:
Q  173 tgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||||||||||||| |||||  |||||||||||||||| |   |||||||||||| |||||    
T  12427492 tgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgtatcaccactc 12427428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 6518566 - 6518484
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaa 130  Q
    |||||||||| |||||||| |||| || |||||   ||||||||||||||| |||||||| |||||| ||| ||||| ||||||    
T  6518566 aaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 42849946 - 42849911
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacc 80  Q
    |||||||||||| |||||||||||||||||||||||    
T  42849946 ggaaaatgttacatgaacaccctttattcctacacc 42849911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 4452012 - 4451951
Alignment:
Q  83 attgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    ||||||||||  ||| ||||||||||||||| ||| ||||| ||||||||| ||||| ||||    
T  4452012 attgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctt 4451951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 16804091 - 16804160
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| ||||||||||||||||||||||||  ||||||||| || ||  ||  |||||||||||| |||||    
T  16804091 ccacatgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16804160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 16843373 - 16843442
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| ||||||||||||||||||||||||  ||||||||| || ||  ||  |||||||||||| |||||    
T  16843373 ccacatgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16843442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 7e-76; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 43571186 - 43570994
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 43571087  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| |||||||| ||  || ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  43571086 ctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatatatcatcactc 43570994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 750407 - 750211
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||    
T  750407 taggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctcaaaaccacactttatc 750308  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||    
T  750307 ttctatttgtgtggggtccatgttaccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgggatggtacatgtatcatcactctt 750211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 5489775 - 5489968
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  5489775 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 5489874  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||| |||||||| ||  || ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  5489875 tctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactc 5489968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 37814778 - 37814969
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| | |||||||||||||| |||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 37814877  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcact 236  Q
    ||||||||||||||| |||||| ||||||||||||||||| | ||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  37814878 ctatttatgtggggtccagattgccacgtgtcagaattttatatggatgtaaagggtgtattgccacatggggtggtacatgtatcaccact 37814969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 48499063 - 48498870
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||| ||||||| ||||||  ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  48499063 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatct 48498964  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    ||||||| |||||||| ||  || ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  48498963 tctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactc 48498870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 44 - 242
Target Start/End: Complemental strand, 24769600 - 24769402
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||| | |||||||| |||||| ||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  24769600 aggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaagttcttatcacaaccacactttatct 24769501  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttcat 242  Q
    ||||||| |||||||| ||  || ||||||||||||||||||||||| ||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  24769500 tctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagagtgtattgccacatggggtggtacatgtatcatcactcttcat 24769402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 4401329 - 4401521
Alignment:
Q  47 aaaatgttacgtgaacacccttt-attcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    |||||| ||| ||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  4401329 aaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcacaaccacactttatcttc 4401428  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||| |||||||| ||   | |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  4401429 tatttgtgtggggtccaatatgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtggtacatgtatcatcactct 4401521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 7447828 - 7448019
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| |||||| |||||||||||||| | |||||||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtacaccc-atgtattacagatattttgataagttcatctcacaaccacactttatcttct 7447926  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||||| ||  || |||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||    
T  7447927 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggaatggtacatgtatcatcactctt 7448019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 50448360 - 50448167
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||| ||||||| ||||||  |||||||||||  ||||||||||||||||||  ||||||||| | ||||||||| ||||||||    
T  50448360 ggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatcttacaaccacattttatctt 50448261  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||||| |||||| | ||  || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  50448260 ctatttttgtgggttccatgttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactct 50448167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 2497660 - 2497469
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttct 146  Q
    |||||||||| | |||||| ||||||| ||||   ||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||| |||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaaccacactttatcatct 2497561  T
Q  147 atttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||||||| | ||||||  |||||||||||||||| ||||||| |||| ||||||||||||||||  ||||||||||||||| ||||||    
T  2497560 atttatgtgggatccagattgtcacgtgtcagaattttatgtgggtataaagggtgtattgccacatggtgtggtacatgtatcaccactct 2497469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 23989625 - 23989431
Alignment:
Q  44 aggaaaatgttacgtgaacacccttt-attcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    ||||||||||||| |||||||||||| |||| |||||   |||||| |||| ||||||||||||||||||| ||| || || ||||||||||||||||||    
T  23989625 aggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcacaaccacactttatc 23989526  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||| |||||||| ||| || |||| ||||||||| ||||||||||||||| |||||||||||| ||  |||||||||||||||| |||||    
T  23989525 ttctatttgtgtggggtccaggttgccacatgtcagaatcttgtgtgggtgtaaagggtgtattgccatatagggtggtacatgtatcaccactc 23989431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 4888085 - 4888235
Alignment:
Q  87 tacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttctatttatgtggggttcagattaccacgtgtcagaattttgt 186  Q
    |||| |||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||| ||||| || || ||| ||| || ||||||||||||    
T  4888085 tacatcccatgtattagggatattttggtaagtttatctcacaaccacactttattttctatttgtgtggtgtccaaattgccatgtatcagaattttgt 4888184  T
Q  187 gtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    |||| |||||| | | |||||||||||| |||||||||||||||||||||||    
T  4888185 gtggatgtaaaggatatattgccacatg-ggtggtacatgtatcatcactct 4888235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 44 - 244
Target Start/End: Original strand, 44112676 - 44112876
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||| || ||||||  ||||||||||||||| |||||||| |||||| ||| ||||| ||||||||| ||||| |||    
T  44112676 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 44112775  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttcatt 243  Q
    |  || |        ||    || |||| ||||||||||||||||||||||||  ||||||||||||||||| |  |||||||||||| ||||||| |||    
T  44112776 ttcatctcctctcacttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgtatcaccactctttatt 44112875  T
Q  244 t 244  Q
    |    
T  44112876 t 44112876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 38335918 - 38336017
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||| || ||||||| |||||||| |||||| |||| |||||||||| ||| ||||| ||||||||| ||||| ||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 38336017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 48119628 - 48119727
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||| || ||||||  ||||||||||||||| |||| |||||||||| ||| ||||| ||||||||| ||||| ||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 48119727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 35003294 - 35003393
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||| || ||||||  ||||||||||||||  |||| |||||||||| ||| ||||| ||||||||| ||||| ||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctt 35003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 41065151 - 41065252
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||||||||| || ||||||   |||||||||||||| |||||||  |||||| ||| ||||| ||||||||| ||||| ||    
T  41065151 taggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctc 41065250  T
Q  143 tt 144  Q
    ||    
T  41065251 tt 41065252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 45427847 - 45427746
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| |||| ||| |||| || ||||||  ||||||||| ||||| |||||||| |||||| ||| ||||| ||||||||| ||||| ||    
T  45427847 taggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctc 45427748  T
Q  143 tt 144  Q
    ||    
T  45427747 tt 45427746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 38113297 - 38113202
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactt 138  Q
    |||||||||||||  ||||||||||||| || ||||||  ||||||||||||||| ||||  || |||||| ||| ||||| ||||||||| ||||    
T  38113297 taggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatactt 38113202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 46168383 - 46168482
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| ||||||||||||| || || | |  ||||||||||| ||| |||| |||||||||| ||| ||||| ||||||||| ||||| ||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 46168482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 45705823 - 45705924
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||  ||||||||||||| || ||||    ||||||||| ||||| |||| ||| |||||||||| ||||| ||||||||| ||||| ||    
T  45705823 taggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctc 45705922  T
Q  143 tt 144  Q
    ||    
T  45705923 tt 45705924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 45639833 - 45639733
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||| ||||| || |||| |  ||||||||||||||  |||| |||||||||| ||| ||||| |||||| || ||||| |||    
T  45639833 aggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctct 45639734  T
Q  144 t 144  Q
    |    
T  45639733 t 45639733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 35000213 - 35000114
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| |||||||| |||| || |||||   |||||| ||  ||||||||||||| |||||||||| || || ||||||||| ||||| ||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctt 35000114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 35003417 - 35003488
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 239  Q
    |||| |||||| |||||||||||||||||  |||||||||||||||| ||  || ||||||||| |||||||    
T  35003417 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtgcatgtatcaccactctt 35003488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 45705948 - 45706017
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacat-gaggtggtacatgtatcatcactc 237  Q
    |||| |||||| |||||||||||||||||  ||||||||||||||| ||||| |||||||||||| |||||    
T  45705948 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggaggt-gtacatgtatcaccactc 45706017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 45427725 - 45427652
Alignment:
Q  165 ttaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 238  Q
    ||||||| |||||| ||||||||||| || ||  |||||||||||||||| ||  |||||||||||| ||||||    
T  45427725 ttaccacatgtcaggattttgtgtggatggaagaggtgtattgccacatggggatgtacatgtatcaccactct 45427652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 48119751 - 48119814
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    |||| |||||| |||||||||||||||||  ||||||||||||| || ||  ||||||||||||    
T  48119751 ccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacgtgggggtgtacatgtatca 48119814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 8346420 - 8346462
Alignment:
Q  170 acgtgtcagaattttgtgtgggtgt-aaatggtgtattgccac 211  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  8346420 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgccac 8346462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 14427346 - 14427404
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtatta 102  Q
    ||||||||||||| ||||||||||||| || ||||||  |||||||||| |||| ||||    
T  14427346 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 32813318 - 32813273
Alignment:
Q  167 accacgtgtcagaattttgtgtgggtg-taaatggtgtattgccac 211  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||    
T  32813318 accacgtgtcagatttttgtgtgggtgttaaagggtgtattgccac 32813273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 35000090 - 35000021
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||| |||||| ||||||| |||||||||  | |||||||||||||| ||  |||||||||||| |||||    
T  35000090 ccacatgtcaggattttgtatgggtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 35000021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 45639697 - 45639640
Alignment:
Q  180 attttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||||||||||||  |||||||||||||| | ||  |||||||||||| |||||    
T  45639697 attttgtgtgggtgtaagaggtgtattgccacaagggggtgtacatgtatcaccactc 45639640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 144; Significance: 3e-75; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 684 - 871
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  684 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatct 783  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 231  Q
    ||||||| ||||| || ||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  784 tctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgaggtggtacatatatca 871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 140; Significance: 6e-73; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 112656 - 112855
Alignment:
Q  46 gaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatcttc 145  Q
    ||||||||||| |||||||||||||||||||||   |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 112755  T
Q  146 tatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactcttcatttt 245  Q
    ||||| |||||||| |||||| |||||||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  112756 tatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactctttatttt 112855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 127; Significance: 4e-65; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 14290 - 14097
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  14290 taggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatc 14191  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||| ||| |||| ||| || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||    
T  14190 ttctatttgtgt-gggtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtggtacatgtatcatcactc 14097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 24618 - 24425
Alignment:
Q  43 taggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatc 142  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  24618 taggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatc 24519  T
Q  143 ttctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||||| ||| |||| ||| || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||    
T  24518 ttctatttgtgt-gggtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtggtacatgtatcatcactc 24425  T

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Target: scaffold0385 (Bit Score: 122; Significance: 4e-62; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 11250 - 11443
Alignment:
Q  44 aggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatct 143  Q
    |||||||||| || ||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||    
T  11250 aggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaaccacactttatct 11349  T
Q  144 tctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| ||||||||| ||  || | ||||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  11350 tctattgatgtggggtccaagttgctacgtgtcagaattttgtgtaggtgtaaatagtgtattgccacatgggatggtacatgtatcatcactc 11443  T

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Target: scaffold0157 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 23521 - 23329
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||| ||||||||| | |||| |||||||||||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatctt 23422  T
Q  145 ctatttatgtggggttcagattaccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactc 237  Q
    |||||| |||| ||||||  || |||||||| |||||||||||||||||||||  |||||||| |||||| |||||| |||||||||| ||||    
T  23421 ctatttgtgtgaggttcaatttgccacgtgttagaattttgtgtgggtgtaaaacgtgtattgtcacatggggtggtgcatgtatcattactc 23329  T

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Target: scaffold0003 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 45817 - 45720
Alignment:
Q  47 aaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||| ||||||||||||| || ||||||  |||||||| || |||||||| |||||||||| ||| ||||| ||||||||| ||||| ||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 45720  T

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Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 45696 - 45624
Alignment:
Q  168 ccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtg-gtacatgtatcatcactcttc 240  Q
    |||| |||||| ||||| |||||||||||  |||||||||||||||| |||| |||||||||||| ||||||||    
T  45696 ccacatgtcaggattttatgtgggtgtaagaggtgtattgccacatg-ggtgtgtacatgtatcaccactcttc 45624  T

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Target: scaffold0100 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 35556 - 35457
Alignment:
Q  45 ggaaaatgttacgtgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttgataagttcatttcacaaccacactttatctt 144  Q
    |||||||||||| | |||||| |||| || ||||||  ||||||||||||||| |||||||| || ||| ||| ||||| ||||||||| ||||| ||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctt 35457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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