View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_high_46 (Length: 398)
Name: NF0836_high_46
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_46 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 18514044 - 18513691
Alignment:
| Q |
16 |
atgagagtaatcttatctttgatcgttcatagtcattacaactcagtggtccnnnnnnntgcaagattctttcacagcttgtacgtgcctaattttatct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18514044 |
atgagagtaatcttatctttgatcgttcatagtcattacaactcagtggtccaaaaaaaggcaagattctttcacagcttgtacgtgcctaattttatct |
18513945 |
T |
|
| Q |
116 |
gactatgctattatcatcttgcactcgtatgctatatcctattttctctctatgatatcatgtacaattcattttcaactttgtatcactttaaaatatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513944 |
gactatgctattatcatcttgcactcgtatgctatatcctattttctctctatgatatcatgtacaattcattttcaactttgtatcactttaaaatatt |
18513845 |
T |
|
| Q |
216 |
aaagaaaaaagaggatataaaaataatttgcaccagaactacataatatgttacggcctgtagaaaactgatgcagccattgcacctactaggatgaaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513844 |
aaagaaaaaagaggatataaaaataatttgcaccagaactacataatatgttacggcctgtagaaaactgatgcagccattgcacctactaggatgaaat |
18513745 |
T |
|
| Q |
316 |
gttgttatggaatttttgctgtgatttactttcacatggcaattgtgaccgcat |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18513744 |
gttgttatggaatttttgctgtgatttactttcacatggcagttgtgaccgcat |
18513691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 130 times since January 2019
Visitors: 6050