View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_51 (Length: 376)
Name: NF0836_high_51
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_51 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 76 - 365
Target Start/End: Complemental strand, 3340914 - 3340626
Alignment:
| Q |
76 |
gaccataccaaaattcccttgagatcaatatgtagggaagggtctttattcctatcaaggataacttcagccaattgtggtacaaaatgtcctgaaaatc |
175 |
Q |
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| T |
3340914 |
gaccataccaaaattcccttgagatcaatatgtagggaagggtctttattcctatcaaggataacttcagccaattgtggtacaaaatgtcctgaaaatc |
3340815 |
T |
|
| Q |
176 |
atgcttcatgatcaattcaaaggacttaaaaattacattttaggtgattattctgattgtgatttcaatacctccatagctctctcctcctatgtacaat |
275 |
Q |
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| T |
3340814 |
atgcttcatgatcaattcaaaggacttaaaa-ttacatgttagatgattattctgatggtgatttcaatacctccatagctctctcctcctatgtacaat |
3340716 |
T |
|
| Q |
276 |
gcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgtaagtatcattggctgtttcataaatttatgtgagtatt |
365 |
Q |
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| T |
3340715 |
gcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgtaagtatcattagctgtttcataaatttatgtgagtatt |
3340626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 3333164 - 3333052
Alignment:
| Q |
235 |
tgatttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgtaagtatc |
334 |
Q |
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| T |
3333164 |
tgattccaatacctgcatagctctctccggctatgtaaaatgctcttgttctatatgatggatacttgagaaaccaattgtgcagaaatgtgtaagcatc |
3333065 |
T |
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| Q |
335 |
attggctgtttca |
347 |
Q |
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||| ||||||||| |
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| T |
3333064 |
attagctgtttca |
3333052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 3333335 - 3333268
Alignment:
| Q |
79 |
cataccaaaattcccttgagatcaatatgtagggaagggtctttattcctatcaaggataacttcagc |
146 |
Q |
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| T |
3333335 |
cataccaaaatgcccttgagatcaatatgaagggaagggtcattgtttctatcaatgatgagttcagc |
3333268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 8349044 - 8348922
Alignment:
| Q |
79 |
cataccaaaattcccttgagatcaatatgtagggaagggtctttattcctatcaaggataacttcagccaattgtggtacaaaatgtcctgaaaatcatg |
178 |
Q |
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||||||||||| ||||||||||||||||| |||||||||| || || ||||||| ||||| |||||| | | ||||||| | | ||||| ||| |||| |
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| T |
8349044 |
cataccaaaatgcccttgagatcaatatgaagggaagggttattgtttctatcaatgataagttcagcaagctctggtacatactttcctgcaaaacatg |
8348945 |
T |
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| Q |
179 |
cttcatgatcaattcaaaggact |
201 |
Q |
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|| |||||||||||| |||||| |
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| T |
8348944 |
ttttatgatcaattcagaggact |
8348922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 42820577 - 42820697
Alignment:
| Q |
79 |
cataccaaaattcccttgagatcaatatgtagggaagggtctttattcctatcaaggataacttcagccaattgtggtacaaaatgtcctgaaaatcatg |
178 |
Q |
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||||||||||| ||||||||||||||||| |||||||||| || || ||||||| ||||| |||||| | | ||||||| | | ||||| ||| |||| |
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| T |
42820577 |
cataccaaaatgcccttgagatcaatatgaagggaagggttattgtttctatcaatgataagttcagcaagctctggtacatactttcctgcaaaacatg |
42820676 |
T |
|
| Q |
179 |
cttcatgatcaattcaaagga |
199 |
Q |
| |
|
|| |||||||||||| |||| |
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| T |
42820677 |
ttttatgatcaattcagagga |
42820697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 342
Target Start/End: Original strand, 35794417 - 35794522
Alignment:
| Q |
237 |
atttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgtaagtatcat |
336 |
Q |
| |
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|||||||||||| ||||||| |||||| ||||||| |||| | |||||||||| || |||||||||||||| || ||||| ||| |||||| ||||| |
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| T |
35794417 |
atttcaatacctgcatagctttctcctgctatgtaaaatgttttacttctatatgatgggaacttgaggaaccaattgtgtagaaaattgtaagcatcat |
35794516 |
T |
|
| Q |
337 |
tggctg |
342 |
Q |
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|||||| |
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| T |
35794517 |
tggctg |
35794522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 35794259 - 35794355
Alignment:
| Q |
78 |
ccataccaaaattcccttgagatcaatatgtagggaagggtctttattcctatcaaggataacttcagccaattgtggtacaaaatgtcctgaaaat |
174 |
Q |
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||||||||||||||||||||||||||| | || || ||||| || ||||||||| |||||| |||||| | || ||||||| | | |||||||||| |
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| T |
35794259 |
ccataccaaaattcccttgagatcaatgtaaagagatgggtccttgttcctatcatggataagttcagcaagttctggtacatactttcctgaaaat |
35794355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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