View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_high_63 (Length: 349)

Name: NF0836_high_63
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_high_63
NF0836_high_63
[»] chr3 (2 HSPs)
chr3 (54-273)||(513916-514135)
chr3 (125-174)||(51763736-51763785)
[»] chr4 (5 HSPs)
chr4 (74-261)||(371242-371422)
chr4 (129-256)||(21833562-21833689)
chr4 (129-177)||(1601177-1601225)
chr4 (225-264)||(532590-532629)
chr4 (130-178)||(53761152-53761200)
[»] chr8 (1 HSPs)
chr8 (127-262)||(18314886-18315021)
[»] chr1 (2 HSPs)
chr1 (218-265)||(9581450-9581497)
chr1 (218-265)||(9587021-9587068)
[»] chr5 (1 HSPs)
chr5 (127-177)||(41900804-41900854)
[»] chr6 (1 HSPs)
chr6 (139-192)||(6588601-6588654)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 514135 - 513916
Alignment:
Q  54 catgtcaaactcttgaaactcaacaaggagtcaatgaaacatgaagtaaaagtcagataattgggaaagtcggtggaaaaggatgaagaggtcaatgttg 153  Q
    |||||||||||| | |||| |||||| ||||||||||||||||||||||||||| |||  ||||||||||||  ||||||||||  ||||||||||||||    
T  514135 catgtcaaactcatcaaacacaacaacgagtcaatgaaacatgaagtaaaagtctgatcgttgggaaagtcgtcggaaaaggatatagaggtcaatgttg 514036  T
Q  154 gtctctgacggagagcagaagcaataccttgattggttatgtgatagctattaaagatgataagctcttgaagaagcttacagtttttgaacaagtggaa 253  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  514035 gtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaagaagcttacagtttttgaacaagtggaa 513936  T
Q  254 aagcaattggttattcaagt 273  Q
    |||| |||||| || |||||    
T  513935 aagcgattggtcatccaagt 513916  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 51763785 - 51763736
Alignment:
Q  125 ggtggaaaaggatgaagaggtcaatgttggtctctgacggagagcagaag 174  Q
    ||||||||||||| |||| |||||||||||||| | ||||||||||||||    
T  51763785 ggtggaaaaggataaagacgtcaatgttggtctttcacggagagcagaag 51763736  T

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Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 74 - 261
Target Start/End: Original strand, 371242 - 371422
Alignment:
Q  74 caacaaggagtcaatgaaacatgaagtaaaagtca-gataattgggaaagtcggtggaaaaggatgaagaggtcaatgttggtctctgacggagagcaga 172  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  371242 caacaaggagtcaatgaaacatgaagtaaaagtcaagatcattgggaaagtcggtggaaaaggataaagaggtcaatgttggtctctgaaggagagcaga 371341  T
Q  173 agcaataccttgattggttatgtgatagctattaaagatgataagctcttgaagaagcttacagtttttgaacaagtggaaaagcaatt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||||||    
T  371342 agcaataccttgattggttatgtgatagctattaaagatgataacctc--------gcttacagtttttgaacaagtggaaaagcaatt 371422  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 256
Target Start/End: Complemental strand, 21833689 - 21833562
Alignment:
Q  129 gaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaataccttgattggttatgtgatagctattaaagatgataagctcttgaagaa 228  Q
    ||||||||| ||||  ||||||||||||||| ||||||||| |||||||| ||||   || |||| ||||  | || ||| ||||| | ||||| |||||    
T  21833689 gaaaaggataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaa 21833590  T
Q  229 gcttacagtttttgaacaagtggaaaag 256  Q
    ||||||| || || | ||||||||||||    
T  21833589 gcttacaattctttagcaagtggaaaag 21833562  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
Q  129 gaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaa 177  Q
    ||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 532590 - 532629
Alignment:
Q  225 agaagcttacagtttttgaacaagtggaaaagcaattggt 264  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  532590 agaagcttacaatttttgaacaagtggaaaagcgattggt 532629  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 53761200 - 53761152
Alignment:
Q  130 aaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaat 178  Q
    |||||||  |||| |||||||||||||| | ||||||||||||||||||    
T  53761200 aaaaggagaaagacgtcaatgttggtctttcacggagagcagaagcaat 53761152  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 262
Target Start/End: Complemental strand, 18315021 - 18314886
Alignment:
Q  127 tggaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaataccttgattggttatgtgatagctattaaagatgataagctcttgaag 226  Q
    |||||| |||| ||||  |||| |||||||||| |||||||||| ||||||||||    |||||||| ||||  |  | ||| |||||   |||||  ||    
T  18315021 tggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgag 18314922  T
Q  227 aagcttacagtttttgaacaagtggaaaagcaattg 262  Q
    |||||||||||| |||||||||||||||||| ||||    
T  18314921 aagcttacagttcttgaacaagtggaaaagcgattg 18314886  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 9581450 - 9581497
Alignment:
Q  218 ctcttgaagaagcttacagtttttgaacaagtggaaaagcaattggtt 265  Q
    ||||| |||||| ||||| ||||||||||||||||||||||| |||||    
T  9581450 ctcttcaagaagattacaatttttgaacaagtggaaaagcaaatggtt 9581497  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 9587021 - 9587068
Alignment:
Q  218 ctcttgaagaagcttacagtttttgaacaagtggaaaagcaattggtt 265  Q
    ||||| |||||| ||||| ||||||||||||||||||||| |||||||    
T  9587021 ctcttcaagaagattacaatttttgaacaagtggaaaagcgattggtt 9587068  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 41900854 - 41900804
Alignment:
Q  127 tggaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaa 177  Q
    ||||||| ||| ||||  |||||||||||||||| ||||||||||||||||    
T  41900854 tggaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaa 41900804  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 6588654 - 6588601
Alignment:
Q  139 aagaggtcaatgttggtctctgacggagagcagaagcaataccttgattggtta 192  Q
    |||| |||||| ||||||||| |||||||||||||||||| |||  ||||||||    
T  6588654 aagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggtta 6588601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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