View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_high_84 (Length: 301)

Name: NF0836_high_84
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_high_84
NF0836_high_84
[»] chr1 (14 HSPs)
chr1 (71-300)||(23486143-23486372)
chr1 (71-222)||(14968956-14969109)
chr1 (76-125)||(11105088-11105137)
chr1 (90-125)||(10153715-10153750)
chr1 (90-125)||(21684426-21684461)
chr1 (102-222)||(9558566-9558687)
chr1 (90-123)||(18515676-18515709)
chr1 (92-125)||(25399051-25399084)
chr1 (90-125)||(2266770-2266805)
chr1 (90-125)||(16235671-16235706)
chr1 (90-125)||(23036869-23036904)
chr1 (90-125)||(23917510-23917545)
chr1 (90-125)||(29215477-29215512)
chr1 (189-227)||(19965705-19965743)
[»] chr2 (12 HSPs)
chr2 (77-219)||(26704219-26704362)
chr2 (90-221)||(24109791-24109923)
chr2 (92-180)||(24109604-24109692)
chr2 (185-222)||(22268357-22268394)
chr2 (92-125)||(27939662-27939695)
chr2 (90-125)||(9015756-9015791)
chr2 (90-125)||(20152388-20152423)
chr2 (90-125)||(28701600-28701635)
chr2 (90-125)||(40202779-40202814)
chr2 (157-214)||(13112773-13112832)
chr2 (90-122)||(33240362-33240394)
chr2 (90-122)||(33248283-33248315)
[»] chr3 (20 HSPs)
chr3 (89-248)||(19264248-19264407)
chr3 (90-125)||(16305589-16305624)
chr3 (90-124)||(7921143-7921177)
chr3 (76-125)||(31779392-31779441)
chr3 (90-122)||(17769434-17769466)
chr3 (90-122)||(19070735-19070767)
chr3 (90-125)||(6175019-6175054)
chr3 (90-125)||(12726672-12726707)
chr3 (90-125)||(18122055-18122090)
chr3 (90-125)||(29855091-29855126)
chr3 (90-125)||(38178086-38178121)
chr3 (90-125)||(40799579-40799614)
chr3 (90-125)||(47207386-47207421)
chr3 (90-125)||(47405864-47405899)
chr3 (92-125)||(10851492-10851525)
chr3 (92-125)||(17697292-17697325)
chr3 (90-123)||(19658416-19658449)
chr3 (90-123)||(22766958-22766991)
chr3 (90-122)||(19643842-19643874)
chr3 (89-117)||(47597253-47597281)
[»] scaffold0010 (1 HSPs)
scaffold0010 (71-223)||(135745-135898)
[»] chr5 (10 HSPs)
chr5 (73-222)||(19903208-19903359)
chr5 (89-219)||(22185628-22185760)
chr5 (71-213)||(6037692-6037835)
chr5 (90-125)||(33022345-33022380)
chr5 (90-125)||(34637251-34637286)
chr5 (173-222)||(12860199-12860249)
chr5 (90-124)||(25740791-25740825)
chr5 (90-123)||(17263147-17263180)
chr5 (185-222)||(19642411-19642448)
chr5 (185-221)||(20689776-20689812)
[»] scaffold0340 (1 HSPs)
scaffold0340 (90-125)||(17643-17678)
[»] scaffold0043 (1 HSPs)
scaffold0043 (90-125)||(2218-2253)
[»] chr8 (6 HSPs)
chr8 (90-125)||(15598428-15598463)
chr8 (90-125)||(17687655-17687690)
chr8 (92-125)||(24634992-24635025)
chr8 (90-125)||(1210182-1210217)
chr8 (76-122)||(34062624-34062670)
chr8 (92-125)||(23264067-23264100)
[»] chr7 (11 HSPs)
chr7 (90-125)||(18362011-18362046)
chr7 (185-222)||(8259044-8259081)
chr7 (92-125)||(10254770-10254803)
chr7 (90-125)||(2499716-2499751)
chr7 (90-125)||(9762363-9762398)
chr7 (90-125)||(15467595-15467630)
chr7 (90-125)||(20598018-20598053)
chr7 (90-125)||(21283817-21283852)
chr7 (90-123)||(11376516-11376549)
chr7 (185-221)||(5075780-5075816)
chr7 (90-122)||(9802858-9802890)
[»] chr4 (11 HSPs)
chr4 (90-125)||(13693476-13693511)
chr4 (90-125)||(24619326-24619361)
chr4 (190-251)||(15521983-15522043)
chr4 (92-125)||(18473708-18473741)
chr4 (94-221)||(8860257-8860385)
chr4 (90-125)||(8105315-8105350)
chr4 (90-125)||(15193358-15193393)
chr4 (165-223)||(20243612-20243671)
chr4 (90-125)||(29121042-29121077)
chr4 (146-223)||(11779552-11779628)
chr4 (92-125)||(32468922-32468955)
[»] chr6 (11 HSPs)
chr6 (185-223)||(6561378-6561416)
chr6 (71-167)||(23601253-23601349)
chr6 (90-125)||(16265582-16265617)
chr6 (90-125)||(20731136-20731171)
chr6 (90-125)||(22801822-22801857)
chr6 (90-125)||(25595859-25595894)
chr6 (90-125)||(31127740-31127775)
chr6 (90-125)||(31720053-31720088)
chr6 (188-222)||(21946554-21946588)
chr6 (92-125)||(21624772-21624805)
chr6 (90-125)||(16915108-16915144)
[»] scaffold0859 (1 HSPs)
scaffold0859 (90-125)||(2665-2700)
[»] scaffold0479 (1 HSPs)
scaffold0479 (90-125)||(9652-9687)
[»] scaffold0351 (1 HSPs)
scaffold0351 (90-125)||(9421-9456)
[»] scaffold0171 (1 HSPs)
scaffold0171 (90-125)||(27823-27858)
[»] scaffold0023 (1 HSPs)
scaffold0023 (90-125)||(103255-103290)
[»] scaffold0003 (1 HSPs)
scaffold0003 (90-125)||(90449-90484)
[»] scaffold0311 (1 HSPs)
scaffold0311 (90-124)||(19758-19792)
[»] scaffold0161 (2 HSPs)
scaffold0161 (92-125)||(10502-10535)
scaffold0161 (92-125)||(15166-15199)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 71 - 300
Target Start/End: Complemental strand, 23486372 - 23486143
Alignment:
Q  71 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaat 170  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||||||| || ||||||| | ||||| ||||||||||||||| |||||||||    
T  23486372 atagtgcacaaacacttcaataatttcttataaactttcatatcttagaaattctgaagtctcatagttcattcgaactttattgtattacacctctaat 23486273  T
Q  171 ggtatatcaattataaatcaaacaatcttttgtttgattaagttagattgtaataagagtctttcttctgtgattgagcaaagggtttattttgcttgtg 270  Q
     |||||| || | |||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| ||| |  || | |||||||||    
T  23486272 tgtatattaagtgtaaatcaaacaatcttttatttgataaagttatattgtaataagagtctttcttttgtgattgagaaaatgaattttcttgcttgtg 23486173  T
Q  271 tgtgggaaatttctaatcttagtgattata 300  Q
    || ||| ||||| |||||||||||||||||    
T  23486172 tgaggggaatttgtaatcttagtgattata 23486143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 14968956 - 14969109
Alignment:
Q  71 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccatt-caaactttattgtattatacctctaa 169  Q
    |||||||||||||| || || |||||||||||||||||||||||||||||||||| || ||||| | ||||||   ||||| ||||||||| |||| | |    
T  14968956 atagtgcacaaacacttagataatttcttataaactttcatatcttagaaattcttaagtctcaaagtccattatgaacttcattgtattacacctttga 14969055  T
Q  170 tggtatatcaattat-aaatcaaacaatcttttgtttgattaagttagattgta 222  Q
    | ||||||||| | | ||| ||||||||||||| ||||||||||||||||||||    
T  14969056 ttgtatatcaagtgtgaaaccaaacaatcttttatttgattaagttagattgta 14969109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 11105137 - 11105088
Alignment:
Q  76 gcacaaacagttcgagaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||| || || ||||||||||||||||||||||||||||||||||    
T  11105137 gcacaaacacttagataatttcttataaactttcatatcttagaaattct 11105088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 10153750 - 10153715
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  10153750 agaatttcttataaactttcatatcttagaaattct 10153715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 21684426 - 21684461
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  21684426 agaatttcttataaactttcatatcttagaaattct 21684461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 9558566 - 9558687
Alignment:
Q  102 aaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattataaa-tcaaacaatcttt 200  Q
    |||||||||||||||||||||| | || | ||  | |||||   ||||||||||||||| |||| | |  ||||||||| | |||| |||||||||||||    
T  9558566 aaactttcatatcttagaaatttttaagtgtccaagtccatatgaactttattgtattacacctttgaatgtatatcaagtgtaaaatcaaacaatcttt 9558665  T
Q  201 tgtttgattaagttagattgta 222  Q
    | ||| ||| ||||||||||||    
T  9558666 tatttaattcagttagattgta 9558687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 18515709 - 18515676
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaatt 123  Q
    ||||||||||||||||||||||||||||||||||    
T  18515709 agaatttcttataaactttcatatcttagaaatt 18515676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 25399084 - 25399051
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||    
T  25399084 aatttcttataaactttcatatcttagaaattct 25399051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 2266805 - 2266770
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  2266805 agaatttcttatcaactttcatatcttagaaattct 2266770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 16235671 - 16235706
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  16235671 agaatttcttatcaactttcatatcttagaaattct 16235706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 23036869 - 23036904
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  23036869 agaatttcttatcaactttcatatcttagaaattct 23036904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 23917545 - 23917510
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||| ||||||||||||||||||    
T  23917545 agaatttcttataaactatcatatcttagaaattct 23917510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 29215512 - 29215477
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  29215512 agaatttcttatcaactttcatatcttagaaattct 29215477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 19965705 - 19965743
Alignment:
Q  189 caaacaatcttttgtttgattaagttagattgtaataag 227  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  19965705 caaacaatcttttatttgattaagttagattgtgataag 19965743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 26704362 - 26704219
Alignment:
Q  77 cacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtata 176  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||  || ||| | | |||||   ||||||| ||||||| || ||| || |||||    
T  26704362 cacaaacactttgagaatttcttataaactttcatatcttagaaattcgtaagtcttagagtccatatgaactttaatgtattacacatctgattgtata 26704263  T
Q  177 tcaa-ttataaatcaaacaatcttttgtttgattaagttagatt 219  Q
    |||| ||  ||| |||||||| |||| |||||||||||||||||    
T  26704262 tcaagtttaaaaccaaacaatattttatttgattaagttagatt 26704219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 24109791 - 24109923
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattat-aaat 188  Q
    |||||| |||||||||||| |||||||||||||||| || ||||| | || |||  || |||||||||||| |||||| || ||||||||| | | ||||    
T  24109791 agaattccttataaacttttatatcttagaaattcttaagtctcagagtcaattttaattttattgtattacacctctgattgtatatcaagtgtaaaat 24109890  T
Q  189 caaacaatcttttgtttgattaagttagattgt 221  Q
     ||||||| |||| | |||||||||||||||||    
T  24109891 taaacaatattttatatgattaagttagattgt 24109923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 24109604 - 24109692
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaa 180  Q
    ||||||||||||||||| |||| ||||||||||| || ||||| | ||||||  || |||||||||||| |||| | || |||||||||    
T  24109604 aatttcttataaacttttatatattagaaattcttaagtctcagagtccatttgaattttattgtattacacctttgattgtatatcaa 24109692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 22268394 - 22268357
Alignment:
Q  185 aaatcaaacaatcttttgtttgattaagttagattgta 222  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  22268394 aaatcaaacaatcttttatttgattaagttagattgta 22268357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 27939695 - 27939662
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||    
T  27939695 aatttcttataaactttcatatcttagaaattct 27939662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 9015756 - 9015791
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  9015756 agaatttcttatcaactttcatatcttagaaattct 9015791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 20152388 - 20152423
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  20152388 agaatttcttatcaactttcatatcttagaaattct 20152423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 28701600 - 28701635
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  28701600 agaatttcttatcaactttcatatcttagaaattct 28701635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 40202779 - 40202814
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||||||||||||||||||| |||||||    
T  40202779 agaatttcttataaactttcatatcttaaaaattct 40202814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 13112773 - 13112832
Alignment:
Q  157 attatacctctaatggtatatcaattataaatc--aaacaatcttttgtttgattaagtt 214  Q
    ||||| |||||||| ||||||||| | ||||||  |||||||||||| ||||||||||||    
T  13112773 attatgcctctaattgtatatcaagtttaaatctcaaacaatcttttatttgattaagtt 13112832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 33240394 - 33240362
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaat 122  Q
    |||||||||||| ||||||||||||||||||||    
T  33240394 agaatttcttattaactttcatatcttagaaat 33240362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 33248315 - 33248283
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaat 122  Q
    |||||||||||| ||||||||||||||||||||    
T  33248315 agaatttcttattaactttcatatcttagaaat 33248283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 19264407 - 19264248
Alignment:
Q  89 gagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattataaa- 187  Q
    ||||||||||||| ||  |||| |||||||||||| | || ||||| | ||||||  ||  ||||||||||| |||||| || |||||| || | ||||     
T  19264407 gagaatttcttattaatcttcaaatcttagaaatttttaagtctcagagtccatttgaaaattattgtattacacctctgattgtatattaagtgtaaaa 19264308  T
Q  188 tcaaacaatcttttgtttgattaagttagattgtaataagagtctttcttctgtgattgag 248  Q
    |||||||||||||| ||||||||||||||||||| | |||  |||||||| ||||||||||    
T  19264307 tcaaacaatcttttatttgattaagttagattgt-agaagtctctttcttgtgtgattgag 19264248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 16305589 - 16305624
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  16305589 agaatttcttataaactttcatatcttagaaattct 16305624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 7921143 - 7921177
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattc 124  Q
    |||||||||||||||||||||||||||||||||||    
T  7921143 agaatttcttataaactttcatatcttagaaattc 7921177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 31779441 - 31779392
Alignment:
Q  76 gcacaaacagttcgagaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||| ||| ||||||||||||||||||| |||||||| |||||||    
T  31779441 gcacaaacacttcaagaatttcttataaacttttatatcttataaattct 31779392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 17769434 - 17769466
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaat 122  Q
    |||||||||||||||||||||||||||||||||    
T  17769434 agaatttcttataaactttcatatcttagaaat 17769466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 19070735 - 19070767
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaat 122  Q
    |||||||||||||||||||||||||||||||||    
T  19070735 agaatttcttataaactttcatatcttagaaat 19070767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 6175054 - 6175019
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  6175054 agaatttcttatcaactttcatatcttagaaattct 6175019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 12726672 - 12726707
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  12726672 agaatttcttatcaactttcatatcttagaaattct 12726707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 18122055 - 18122090
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  18122055 agaatttcttatcaactttcatatcttagaaattct 18122090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 29855126 - 29855091
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  29855126 agaatttcttatcaactttcatatcttagaaattct 29855091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 38178086 - 38178121
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  38178086 agaatttcttatcaactttcatatcttagaaattct 38178121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 40799614 - 40799579
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  40799614 agaatttcttatcaactttcatatcttagaaattct 40799579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 47207421 - 47207386
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  47207421 agaatttcttatcaactttcatatcttagaaattct 47207386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 47405864 - 47405899
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  47405864 agaatttcttatcaactttcatatcttagaaattct 47405899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 10851525 - 10851492
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||| ||||||||||||||||||||||||    
T  10851525 aatttcttaaaaactttcatatcttagaaattct 10851492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 17697325 - 17697292
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||| |||||||||||||||||||||||    
T  17697325 aatttcttatcaactttcatatcttagaaattct 17697292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 19658416 - 19658449
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaatt 123  Q
    |||||||||||| |||||||||||||||||||||    
T  19658416 agaatttcttatcaactttcatatcttagaaatt 19658449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 22766958 - 22766991
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaatt 123  Q
    |||||||||||| |||||||||||||||||||||    
T  22766958 agaatttcttattaactttcatatcttagaaatt 22766991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 19643842 - 19643874
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaat 122  Q
    |||||||||||| ||||||||||||||||||||    
T  19643842 agaatttcttattaactttcatatcttagaaat 19643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 47597281 - 47597253
Alignment:
Q  89 gagaatttcttataaactttcatatctta 117  Q
    |||||||||||||||||||||||||||||    
T  47597281 gagaatttcttataaactttcatatctta 47597253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 135898 - 135745
Alignment:
Q  71 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaat 170  Q
    |||| ||| ||||| || ||||| ||||||||||||||||||||||| ||||||  || ||| | | |||||  |||| ||||| ||||| |||||| ||    
T  135898 atagcgcataaacacttagagaaattcttataaactttcatatcttataaattcgtaagtcttagagtccatctaaaccttattttattacacctctgat 135799  T
Q  171 ggtatatcaattataaatc-aaacaatcttttgtttgattaagttagattgtaa 223  Q
     ||||||||| | |||| | ||| |||||||| ||||||||||||| |||||||    
T  135798 tgtatatcaagtgtaaaactaaataatcttttatttgattaagttaaattgtaa 135745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 19903359 - 19903208
Alignment:
Q  73 agtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattc-aaactttattgtattatacctctaatg 171  Q
    ||||||||| || || ||||||||||||||||||||||||||||||||||||| || ||| | | | || || ||| ||||||| ||||  ||||| ||     
T  19903359 agtgcacaatcacttagagaatttcttataaactttcatatcttagaaattcttaagtcttagagttcaatctaaattttattg-attactcctctgatc 19903261  T
Q  172 gtatatcaattataaa--tcaaacaatcttttgtttgattaagttagattgta 222  Q
    ||||||||| ||||||   |||| |||||||| ||||||||||||| ||||||    
T  19903260 gtatatcaagtataaaacccaaataatcttttatttgattaagttaaattgta 19903208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 22185760 - 22185628
Alignment:
Q  89 gagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattataaa- 187  Q
    ||||| |||||| ||||||||||||||||||| |||| || | | | | |||||   ||||||||| |||||||||||| || ||||||||| | ||||     
T  22185760 gagaaattcttacaaactttcatatcttagaatttcttaagttttagagtccatctgaactttattctattatacctctgattgtatatcaagtgtaaaa 22185661  T
Q  188 -tcaaacaatcttttgtttgattaagttagatt 219  Q
     || ||||||||||| |||||||||||||||||    
T  22185660 atctaacaatcttttatttgattaagttagatt 22185628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 6037835 - 6037692
Alignment:
Q  71 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaat 170  Q
    |||| ||||||||| || ||||||||||||||||||||||||| ||| ||||||  || ||| | | ||||||  ||||||||||||||| |||| | ||    
T  6037835 atagcgcacaaacatttagagaatttcttataaactttcatatgttaaaaattcataagtcttagagtccatttgaactttattgtattacacctttgat 6037736  T
Q  171 ggtatatcaattat-aaatcaaacaatcttttgtttgattaagt 213  Q
      |||||||| | | |||||||| | |||||| |||||||||||    
T  6037735 tctatatcaagtgtaaaatcaaatagtcttttatttgattaagt 6037692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 33022380 - 33022345
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  33022380 agaatttcttatcaactttcatatcttagaaattct 33022345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 34637286 - 34637251
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||||||||||||| |||||||||||||    
T  34637286 agaatttcttataaactttcatgtcttagaaattct 34637251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 12860199 - 12860249
Alignment:
Q  173 tatatcaattataaa-tcaaacaatcttttgtttgattaagttagattgta 222  Q
    |||||||| |||||| ||||||| |||||| ||||||||||||||||||||    
T  12860199 tatatcaagtataaaatcaaacagtcttttatttgattaagttagattgta 12860249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 25740825 - 25740791
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattc 124  Q
    |||||||||||| ||||||||||||||||||||||    
T  25740825 agaatttcttatcaactttcatatcttagaaattc 25740791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 17263147 - 17263180
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaatt 123  Q
    |||||||||||| |||||||||||||||||||||    
T  17263147 agaatttcttattaactttcatatcttagaaatt 17263180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 19642411 - 19642448
Alignment:
Q  185 aaatcaaacaatcttttgtttgattaagttagattgta 222  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19642411 aaatcaaataatcttttatttgattaagttagattgta 19642448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 20689812 - 20689776
Alignment:
Q  185 aaatcaaacaatcttttgtttgattaagttagattgt 221  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  20689812 aaatcaaacaatcttttatttgattaagtttgattgt 20689776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 17678 - 17643
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  17678 agaatttcttataaactttcatatcttagaaattct 17643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 2218 - 2253
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  2218 agaatttcttataaactttcatatcttagaaattct 2253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 15598463 - 15598428
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  15598463 agaatttcttataaactttcatatcttagaaattct 15598428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 17687690 - 17687655
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  17687690 agaatttcttataaactttcatatcttagaaattct 17687655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 24635025 - 24634992
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||    
T  24635025 aatttcttataaactttcatatcttagaaattct 24634992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 1210182 - 1210217
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||||||||||||||| |||||||||||    
T  1210182 agaatttcttataaactttcatatattagaaattct 1210217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 34062624 - 34062670
Alignment:
Q  76 gcacaaacagttcgagaatttcttataaactttcatatcttagaaat 122  Q
    ||||||||| ||  |||||||||||||||||||||||||||| ||||    
T  34062624 gcacaaacacttaaagaatttcttataaactttcatatcttaaaaat 34062670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 23264067 - 23264100
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||| |||||||||||||||||||||||    
T  23264067 aatttcttatcaactttcatatcttagaaattct 23264100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 18362011 - 18362046
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  18362011 agaatttcttataaactttcatatcttagaaattct 18362046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 8259081 - 8259044
Alignment:
Q  185 aaatcaaacaatcttttgtttgattaagttagattgta 222  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8259081 aaatcaaacaatcttttatttgattaagttagattgta 8259044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 10254770 - 10254803
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||    
T  10254770 aatttcttataaactttcatatcttagaaattct 10254803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 2499751 - 2499716
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  2499751 agaatttcttatcaactttcatatcttagaaattct 2499716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 9762398 - 9762363
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||| ||||||||||||||    
T  9762398 agaatttcttataaactttcaaatcttagaaattct 9762363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 15467630 - 15467595
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  15467630 agaatttcttatcaactttcatatcttagaaattct 15467595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 20598053 - 20598018
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||| |||||||||||||||||||||||||    
T  20598053 agaatttcttgtaaactttcatatcttagaaattct 20598018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 21283817 - 21283852
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  21283817 agaatttcttatcaactttcatatcttagaaattct 21283852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 11376549 - 11376516
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaatt 123  Q
    |||||||||| |||||||||||||||||||||||    
T  11376549 agaatttcttgtaaactttcatatcttagaaatt 11376516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 5075780 - 5075816
Alignment:
Q  185 aaatcaaacaatcttttgtttgattaagttagattgt 221  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  5075780 aaatcaaacaatcttttatttgatcaagttagattgt 5075816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 9802890 - 9802858
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaat 122  Q
    |||||||||||||||||||||| ||||||||||    
T  9802890 agaatttcttataaactttcatttcttagaaat 9802858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 13693511 - 13693476
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  13693511 agaatttcttataaactttcatatcttagaaattct 13693476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 24619361 - 24619326
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  24619361 agaatttcttataaactttcatatcttagaaattct 24619326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 15521983 - 15522043
Alignment:
Q  190 aaacaatcttttgtttgattaagttagattgtaataagagtctttcttctgtgattgagcaa 251  Q
    |||||||||||| ||||||||||||||||||||| |||  |||||||| | |||||||||||    
T  15521983 aaacaatcttttatttgattaagttagattgtaa-aagtttctttcttgtatgattgagcaa 15522043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 18473741 - 18473708
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||||||||||||||||||    
T  18473741 aatttcttataaactttcatatcttagaaattct 18473708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 8860385 - 8860257
Alignment:
Q  94 tttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctctaatggtatatcaattat-aaatcaaa 192  Q
    |||||||||||||||||||||||||||||||| |  ||||| | | | |  |||||||||||| ||| | ||||||| |||||| ||   | ||| ||||    
T  8860385 tttcttataaactttcatatcttagaaattcttatgtctcagagttcgtctaaactttattgtcttacatctctaattgtatattaagagtaaaaccaaa 8860286  T
Q  193 caatcttttgtttgattaagttagattgt 221  Q
    ||||||| | ||  |||||||||||||||    
T  8860285 caatcttctattatattaagttagattgt 8860257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 8105350 - 8105315
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  8105350 agaatttcttatcaactttcatatcttagaaattct 8105315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 15193393 - 15193358
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||||||| ||||||||||||||||    
T  15193393 agaatttcttataaacttttatatcttagaaattct 15193358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 20243671 - 20243612
Alignment:
Q  165 tctaatggtatatcaattataaatc-aaacaatcttttgtttgattaagttagattgtaa 223  Q
    |||||| ||||||||| | |||| | |||||||||||| |||||||||||||||||||||    
T  20243671 tctaattgtatatcaagtgtaaaaccaaacaatcttttatttgattaagttagattgtaa 20243612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 29121077 - 29121042
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  29121077 agaatttcttatcaactttcatatcttagaaattct 29121042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 11779628 - 11779552
Alignment:
Q  146 aactttattgtattatacctctaatggtatatcaattataaatcaaacaatcttttgtttgattaagttagattgtaa 223  Q
    ||||||||||||||| |||||||||  |||||||| | |||| | |||||||  || ||||||||| |||||||||||    
T  11779628 aactttattgtattacacctctaattttatatcaagtctaaacctaacaatc-attatttgattaatttagattgtaa 11779552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 32468922 - 32468955
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||||||||||||||||| |||||||    
T  32468922 aatttcttataaactttcatatcttataaattct 32468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 6561378 - 6561416
Alignment:
Q  185 aaatcaaacaatcttttgtttgattaagttagattgtaa 223  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  6561378 aaatcaaacaatcttttatttgattaagttagattgtaa 6561416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 23601253 - 23601349
Alignment:
Q  71 atagtgcacaaacagttcgagaatttcttataaactttcatatcttagaaattctcaaatctcataatccattcaaactttattgtattatacctct 167  Q
    |||| |||||| || || |||||||||||| |||||||||| |||||||||||   |  ||||| | |||||  |||||||||||||||| ||||||    
T  23601253 atagcgcacaagcacttagagaatttcttacaaactttcatgtcttagaaattaatacgtctcagagtccatctaaactttattgtattacacctct 23601349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 16265582 - 16265617
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  16265582 agaatttcttatcaactttcatatcttagaaattct 16265617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 20731136 - 20731171
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  20731136 agaatttcttatcaactttcatatcttagaaattct 20731171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 22801857 - 22801822
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  22801857 agaatttcttatcaactttcatatcttagaaattct 22801822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 25595894 - 25595859
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||||||||||||| |||||||||||||    
T  25595894 agaatttcttataaactttcatttcttagaaattct 25595859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 31127740 - 31127775
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||||||||||||||||||||| |||||    
T  31127740 agaatttcttataaactttcatatcttagatattct 31127775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 31720053 - 31720088
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31720053 agaatttcttataaattttcatatcttagaaattct 31720088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 21946554 - 21946588
Alignment:
Q  188 tcaaacaatcttttgtttgattaagttagattgta 222  Q
    |||||||||||||| ||||||||||||||||||||    
T  21946554 tcaaacaatcttttatttgattaagttagattgta 21946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 21624805 - 21624772
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||| |||||||||||||||||||||||    
T  21624805 aatttcttatcaactttcatatcttagaaattct 21624772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 16915144 - 16915108
Alignment:
Q  90 agaatttcttat-aaactttcatatcttagaaattct 125  Q
    |||||||||||| ||||||||||||||||||||||||    
T  16915144 agaatttcttatcaaactttcatatcttagaaattct 16915108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 2700 - 2665
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  2700 agaatttcttatcaactttcatatcttagaaattct 2665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 9687 - 9652
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  9687 agaatttcttatcaactttcatatcttagaaattct 9652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 9421 - 9456
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||||||||||||||||||| |||||||    
T  9421 agaatttcttataaactttcatatcttacaaattct 9456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 27823 - 27858
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  27823 agaatttcttatcaactttcatatcttagaaattct 27858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 103290 - 103255
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  103290 agaatttcttatcaactttcatatcttagaaattct 103255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 90449 - 90484
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  90449 agaatttcttatcaactttcatatcttagaaattct 90484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 19792 - 19758
Alignment:
Q  90 agaatttcttataaactttcatatcttagaaattc 124  Q
    |||||||||||| ||||||||||||||||||||||    
T  19792 agaatttcttatcaactttcatatcttagaaattc 19758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 10502 - 10535
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||| |||||||||||||||||||||||    
T  10502 aatttcttatcaactttcatatcttagaaattct 10535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 15166 - 15199
Alignment:
Q  92 aatttcttataaactttcatatcttagaaattct 125  Q
    |||||||||| |||||||||||||||||||||||    
T  15166 aatttcttatcaactttcatatcttagaaattct 15199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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