View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_high_89 (Length: 276)
Name: NF0836_high_89
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_89 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32162049 - 32161822
Alignment:
| Q |
1 |
ccttttcctccacctcttcctcgcatacaatttctcctctcgtggaccccatcaaaactagtgtagtcattgtcat------ggagaatcacttattcaa |
94 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| | |
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| T |
32162049 |
ccttttcctccacctcttccttgcatacaatttctcctctcgtggaccccatcaaaactagtgtagtcattgtcattgtcatggagaatcgctcattcga |
32161950 |
T |
|
| Q |
95 |
ccacgtctttgactagctcaagttaatgtgacattgacgatctcaccaacacatgattaatatttctaagacgaagaatggcgttgaaagattggtgtag |
194 |
Q |
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|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32161949 |
ccacgtctttgggtggctcaagttaatgtgacattgacgatctcaccaacacatgattaatatttctaagacgaagaatggcgttgaaagattggtgtag |
32161850 |
T |
|
| Q |
195 |
gtgtggttggatgggaaagatggatatc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
32161849 |
gtgtggttggatgggaaagatggatatc |
32161822 |
T |
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