View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_high_90 (Length: 276)

Name: NF0836_high_90
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_high_90
NF0836_high_90
[»] chr4 (33 HSPs)
chr4 (112-269)||(24517986-24518158)
chr4 (192-267)||(29581049-29581124)
chr4 (121-161)||(24518154-24518194)
chr4 (192-267)||(45874102-45874178)
chr4 (207-249)||(12767149-12767191)
chr4 (199-267)||(1174005-1174074)
chr4 (191-267)||(12735477-12735554)
chr4 (207-267)||(53457886-53457947)
chr4 (199-266)||(238464-238532)
chr4 (219-265)||(48822887-48822934)
chr4 (222-267)||(1966627-1966673)
chr4 (222-267)||(26424863-26424909)
chr4 (222-267)||(34739357-34739403)
chr4 (222-263)||(39807921-39807963)
chr4 (222-267)||(43139911-43139957)
chr4 (193-265)||(19673936-19674009)
chr4 (220-267)||(12867916-12867964)
chr4 (192-267)||(22608032-22608108)
chr4 (192-267)||(23417488-23417564)
chr4 (192-263)||(24417887-24417959)
chr4 (192-267)||(28798393-28798469)
chr4 (207-262)||(37134110-37134166)
chr4 (220-259)||(52768313-52768353)
chr4 (222-267)||(18257406-18257452)
chr4 (222-267)||(19849508-19849554)
chr4 (222-267)||(23710338-23710384)
chr4 (222-267)||(31015059-31015105)
chr4 (201-266)||(37620673-37620739)
chr4 (223-263)||(23532125-23532166)
chr4 (222-262)||(52172000-52172041)
chr4 (220-267)||(1125962-1126010)
chr4 (212-267)||(16555374-16555430)
chr4 (192-267)||(55214699-55214775)
[»] chr3 (25 HSPs)
chr3 (192-267)||(43775270-43775346)
chr3 (192-267)||(43247655-43247731)
chr3 (192-265)||(33334655-33334729)
chr3 (207-267)||(3113000-3113061)
chr3 (192-267)||(38257308-38257384)
chr3 (192-266)||(55018040-55018115)
chr3 (222-267)||(7824459-7824505)
chr3 (222-267)||(9349681-9349727)
chr3 (222-267)||(29689487-29689533)
chr3 (222-267)||(36228999-36229045)
chr3 (222-267)||(54158343-54158389)
chr3 (207-267)||(4601487-4601548)
chr3 (192-267)||(28844551-28844628)
chr3 (199-267)||(51665930-51665999)
chr3 (207-267)||(52500900-52500961)
chr3 (223-269)||(27230744-27230791)
chr3 (222-267)||(42392810-42392856)
chr3 (222-267)||(54151686-54151732)
chr3 (222-267)||(55320405-55320451)
chr3 (222-267)||(475286-475331)
chr3 (207-267)||(8151410-8151471)
chr3 (196-267)||(1778902-1778974)
chr3 (192-248)||(35461504-35461560)
chr3 (208-267)||(40756732-40756792)
chr3 (196-267)||(47635010-47635082)
[»] chr8 (31 HSPs)
chr8 (192-267)||(28817303-28817379)
chr8 (192-267)||(32333161-32333237)
chr8 (192-267)||(35779502-35779578)
chr8 (208-267)||(40932772-40932832)
chr8 (192-267)||(41849237-41849312)
chr8 (222-267)||(31532130-31532176)
chr8 (207-267)||(42192644-42192705)
chr8 (207-267)||(42885236-42885297)
chr8 (192-267)||(1345-1421)
chr8 (192-267)||(7792708-7792784)
chr8 (222-267)||(70528-70574)
chr8 (222-267)||(1078653-1078699)
chr8 (222-267)||(6602523-6602569)
chr8 (222-267)||(6677976-6678022)
chr8 (222-267)||(7813399-7813445)
chr8 (211-249)||(42364726-42364764)
chr8 (223-267)||(9292096-9292141)
chr8 (192-263)||(3822443-3822515)
chr8 (207-267)||(7403700-7403760)
chr8 (220-267)||(20269605-20269653)
chr8 (220-267)||(21056234-21056282)
chr8 (220-267)||(29425426-29425474)
chr8 (222-267)||(39303386-39303433)
chr8 (222-267)||(4530987-4531033)
chr8 (198-267)||(9775047-9775117)
chr8 (222-267)||(13891167-13891213)
chr8 (222-267)||(31695274-31695320)
chr8 (222-263)||(45264649-45264691)
chr8 (207-267)||(39435344-39435405)
chr8 (208-249)||(41753004-41753045)
chr8 (222-265)||(5385415-5385459)
[»] chr1 (23 HSPs)
chr1 (192-267)||(35945844-35945920)
chr1 (192-267)||(28455921-28455997)
chr1 (192-267)||(48660069-48660145)
chr1 (222-267)||(13109847-13109893)
chr1 (191-267)||(7059513-7059590)
chr1 (207-267)||(41808264-41808325)
chr1 (192-266)||(41761417-41761492)
chr1 (222-267)||(5055793-5055839)
chr1 (222-267)||(32007151-32007197)
chr1 (192-265)||(39276397-39276471)
chr1 (222-267)||(41039308-41039354)
chr1 (222-267)||(45813016-45813062)
chr1 (207-267)||(29994388-29994449)
chr1 (192-267)||(192462-192538)
chr1 (192-267)||(26032848-26032924)
chr1 (208-267)||(26264541-26264601)
chr1 (222-267)||(20825-20871)
chr1 (222-267)||(5943758-5943804)
chr1 (222-267)||(13097381-13097427)
chr1 (223-267)||(7275759-7275804)
chr1 (223-267)||(25931162-25931207)
chr1 (207-267)||(49783769-49783830)
chr1 (227-266)||(11688345-11688385)
[»] scaffold0032 (1 HSPs)
scaffold0032 (192-267)||(56528-56604)
[»] chr7 (33 HSPs)
chr7 (220-267)||(11355898-11355946)
chr7 (192-267)||(44083987-44084063)
chr7 (197-265)||(5772826-5772895)
chr7 (207-267)||(25546280-25546341)
chr7 (207-267)||(31288229-31288290)
chr7 (192-267)||(43753758-43753835)
chr7 (207-267)||(47570723-47570784)
chr7 (192-267)||(2146683-2146759)
chr7 (192-267)||(40058285-40058361)
chr7 (192-265)||(27229484-27229559)
chr7 (222-267)||(4106815-4106861)
chr7 (222-267)||(4107386-4107432)
chr7 (207-249)||(10220496-10220538)
chr7 (218-267)||(19630673-19630723)
chr7 (222-267)||(23358262-23358308)
chr7 (222-267)||(31770537-31770583)
chr7 (222-267)||(38781213-38781259)
chr7 (208-262)||(46427423-46427477)
chr7 (199-267)||(25112252-25112321)
chr7 (222-262)||(34763519-34763560)
chr7 (207-267)||(47557843-47557904)
chr7 (220-267)||(5462955-5463003)
chr7 (220-267)||(27915585-27915633)
chr7 (192-267)||(28603058-28603134)
chr7 (222-267)||(8439155-8439201)
chr7 (222-267)||(38033806-38033852)
chr7 (222-267)||(48146830-48146876)
chr7 (223-267)||(15634884-15634929)
chr7 (199-267)||(35309908-35309977)
chr7 (199-267)||(41183869-41183938)
chr7 (227-267)||(47250256-47250297)
chr7 (223-267)||(48444157-48444202)
chr7 (192-267)||(39513988-39514064)
[»] chr5 (15 HSPs)
chr5 (192-267)||(21018270-21018346)
chr5 (191-267)||(2971030-2971107)
chr5 (207-267)||(41580080-41580141)
chr5 (192-267)||(35317702-35317778)
chr5 (222-267)||(4824944-4824990)
chr5 (222-267)||(29265952-29265998)
chr5 (222-267)||(31909390-31909436)
chr5 (222-267)||(32143419-32143465)
chr5 (191-267)||(12257402-12257479)
chr5 (192-267)||(13204004-13204080)
chr5 (192-267)||(40177671-40177747)
chr5 (225-267)||(23262624-23262667)
chr5 (222-267)||(2786348-2786393)
chr5 (207-267)||(17984747-17984808)
chr5 (192-267)||(6021039-6021115)
[»] chr2 (20 HSPs)
chr2 (192-267)||(23839906-23839982)
chr2 (192-267)||(34460416-34460492)
chr2 (192-267)||(45125170-45125246)
chr2 (192-267)||(11816555-11816632)
chr2 (192-267)||(19537354-19537430)
chr2 (192-267)||(26605671-26605747)
chr2 (192-267)||(37197615-37197691)
chr2 (222-267)||(10639611-10639657)
chr2 (222-267)||(29659223-29659269)
chr2 (222-267)||(33083559-33083605)
chr2 (222-267)||(42578245-42578291)
chr2 (222-266)||(4851397-4851442)
chr2 (223-267)||(43778473-43778518)
chr2 (192-267)||(11708725-11708801)
chr2 (208-267)||(44181892-44181952)
chr2 (222-267)||(11459792-11459838)
chr2 (198-267)||(27137923-27137993)
chr2 (222-267)||(39831449-39831495)
chr2 (207-267)||(40825163-40825224)
chr2 (192-267)||(4800923-4800999)
[»] chr6 (11 HSPs)
chr6 (210-264)||(10999416-10999471)
chr6 (222-267)||(4464204-4464250)
chr6 (222-267)||(33621571-33621617)
chr6 (222-267)||(35218645-35218691)
chr6 (207-267)||(2959211-2959272)
chr6 (192-267)||(21037338-21037413)
chr6 (222-265)||(33704293-33704337)
chr6 (222-267)||(19145547-19145593)
chr6 (207-267)||(361073-361134)
chr6 (199-267)||(21000746-21000815)
chr6 (188-244)||(17590391-17590447)
[»] scaffold0119 (2 HSPs)
scaffold0119 (192-267)||(13956-14032)
scaffold0119 (192-267)||(19636-19712)
[»] scaffold1348 (1 HSPs)
scaffold1348 (222-267)||(867-913)
[»] scaffold0053 (1 HSPs)
scaffold0053 (222-267)||(22240-22286)
[»] scaffold0352 (1 HSPs)
scaffold0352 (222-267)||(8948-8994)
[»] scaffold0044 (1 HSPs)
scaffold0044 (222-267)||(9978-10024)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 24518158 - 24517986
Alignment:
Q  112 taattgcagaaacatctgatatgttgtgacacacattctaactcgtaatttcttacttctggatattctgacaaatgct--------------agacgtt 197  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||               ||||||    
T  24518158 taattgcagaaacatctgatatgttgtaacacacattctaactcgtaatttcttatttctcgatattctgacaaatgctgaaattgtaagaccggacgtt 24518059  T
Q  198 gtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaa-tttcatggattaccacttcatctca 269  Q
    |||||| ||||||||| ||||||||||||| || ||||||||||||| ||| ||| |||||||||| ||||||    
T  24518058 gtgacccgtgttcgaacccgaaatctcacaattatgtgtgagtttaattttaatgaattaccacttaatctca 24517986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 29581124 - 29581049
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttcatggattaccacttcatct 267  Q
    ||||| |||||||  ||||||| |||| | ||||||||||||||||||||||||||  ||||||||||||||||||    
T  29581124 gacgtcgtgacctaggttcgaacccgagacctcacagttgtgtgtgagtttaatttagtggattaccacttcatct 29581049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 24518194 - 24518154
Alignment:
Q  121 aaacatctgatatgttgtgacacacattctaactcgtaatt 161  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24518194 aaacatctgatatgttgtgacacacattctaactcgtaatt 24518154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 45874102 - 45874178
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  45874102 gacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 45874178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 12767149 - 12767191
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca 249  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  12767149 gttcgaatccgaaacctcacagttgtgtgtgagtttaatttca 12767191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 1174005 - 1174074
Alignment:
Q  199 tgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  1174005 tgacctgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 1174074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 12735477 - 12735554
Alignment:
Q  191 agacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||| | ||||||| ||   | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  12735477 agacgttgtgacccgggttcgaacccaggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 12735554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 53457886 - 53457947
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  53457886 gttcgaatccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 53457947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 238532 - 238464
Alignment:
Q  199 tgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatc 266  Q
    ||||||| ||||||| |||  | |||||||||||||||||||||| ||||| |||||||||||||||||    
T  238532 tgacctgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatc 238464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 48822887 - 48822934
Alignment:
Q  219 aatctcacagttgtgtgtgagtttaatttc-atggattaccacttcat 265  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  48822887 aatctcacagttgtgtgtgagtttaatttcaatagattaccacttcat 48822934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 1966627 - 1966673
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||    
T  1966627 ctcacagttgtgtgtgagtttaatttcagtggattacaacttcatct 1966673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 26424909 - 26424863
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  26424909 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 26424863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 34739357 - 34739403
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  34739357 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 34739403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 39807921 - 39807963
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttc 263  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  39807921 ctcacagttgtgtgtgagtttaatttcagtggattaccacttc 39807963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 43139957 - 43139911
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  43139957 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 43139911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 19674009 - 19673936
Alignment:
Q  193 acgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcat 265  Q
    ||||||||||||| ||||||| |||  | |||||| || |||| ||||||||||||| ||||||||||||||||    
T  19674009 acgttgtgacctgggttcgaacccgggacctcacaattatgtgcgagtttaatttcagtggattaccacttcat 19673936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 12867916 - 12867964
Alignment:
Q  220 atctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  12867916 atctcacagttgtgagtgagtttattttcagtggattaccacttcatct 12867964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 22608032 - 22608108
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    ||||| |||||| | ||||||| |||  | ||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  22608032 gacgtcgtgacccgggttcgaacccgggacctcacagttgtgtctgagtttaatttcaatggattactacttcatct 22608108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 23417564 - 23417488
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  |  | ||||||||||||||||||| ||||| ||||||||||||||||||    
T  23417564 gacgttgtgacccgggttcgaacccgggactttacagttgtgtgtgagtttattttcagtggattaccacttcatct 23417488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 24417959 - 24417887
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttc 263  Q
    ||||| |||||| | |||||||||||| | ||||||||||||  |||||||||||| | ||||||||||||||    
T  24417959 gacgtcgtgacccgggttcgaatccgagacctcacagttgtggatgagtttaattttagtggattaccacttc 24417887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 28798469 - 28798393
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||| | ||||||| |||  | || ||||||||||||||||||| ||||| ||||||||||||||||||    
T  28798469 gacgtcgtgacccgggttcgaacccgggaccttacagttgtgtgtgagtttattttcagtggattaccacttcatct 28798393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 37134110 - 37134166
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccactt 262  Q
    ||||||| ||||||  ||||||||||||||||||||||||||| ||| |||||||||    
T  37134110 gttcgaacccgaaacttcacagttgtgtgtgagtttaatttcagtggtttaccactt 37134166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 52768353 - 52768313
Alignment:
Q  220 atctcacagttgtgtgtgagtttaatttc-atggattacca 259  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  52768353 atctcacagttgtgtgtgagtttaatttcaatggattacca 52768313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 18257406 - 18257452
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  18257406 ctcacagttgtgcgtgagtttattttcagtggattaccacttcatct 18257452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 19849554 - 19849508
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    |||||||||||||||||||||| |||| |||| ||||||||||||||    
T  19849554 ctcacagttgtgtgtgagtttattttcaatggtttaccacttcatct 19849508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 23710384 - 23710338
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||||    
T  23710384 ctcacagttacgtgtgagtttaatttcagtggattaccacttcatct 23710338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 31015059 - 31015105
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||    
T  31015059 ctcacagttgtgtgtgagtttaatttcagtgctttaccacttcatct 31015105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 37620673 - 37620739
Alignment:
Q  201 acctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatc 266  Q
    ||||| ||||||| |||  || |||||| | |||||||||||||||||| |||||||||||||||||    
T  37620673 acctgggttcgaacccgggatatcacaggtttgtgtgagtttaatttcagtggattaccacttcatc 37620739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 23532125 - 23532166
Alignment:
Q  223 tcacagttgtgtgtgagtttaatttca-tggattaccacttc 263  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  23532125 tcacagttgtgtgtgagtttaatttcagtgaattaccacttc 23532166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 52172041 - 52172000
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccactt 262  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  52172041 ctcacaattgtgtgtgagtttaatttcagtggattaccactt 52172000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 1125962 - 1126010
Alignment:
Q  220 atctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    ||||||||||||||| ||||||||||||| ||  |||||||||||||||    
T  1125962 atctcacagttgtgtatgagtttaatttcaataaattaccacttcatct 1126010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 16555374 - 16555430
Alignment:
Q  212 aatccgaaatctcacagttgtgtgtgagtttaa-tttcatggattaccacttcatct 267  Q
    |||| |||| ||||||||||||||||| ||||| ||| ||| |||||||||||||||    
T  16555374 aatctgaaacctcacagttgtgtgtgaatttaattttaatgaattaccacttcatct 16555430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 55214699 - 55214775
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||| | ||||||| |||  | ||||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  55214699 gacgtcgtgacccgggttcgaacccgggacctcacagttgtgtatgagtttattttcagtggattaccactttatct 55214775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 43775270 - 43775346
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||| || ||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  43775270 gacgttgtgacttgcgttcgaatccggaatctcacagttgtatttgagtttaatttcagtggattaccacttcatct 43775346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 43247731 - 43247655
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||| ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  43247731 gacgttgtgacctgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 43247655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 33334655 - 33334729
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcat 265  Q
    |||||||||||||| |||||||||||  | |||||||||||||||||||||||||||| | ||||| ||||||||    
T  33334655 gacgttgtgacctgagttcgaatccgggacctcacagttgtgtgtgagtttaatttcagtagattatcacttcat 33334729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 3113061 - 3113000
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| |||  |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  3113061 gttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 3113000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 38257384 - 38257308
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||||| ||||||| ||  || |||||| |||||||||||||||||||||  |||||||||||||||||    
T  38257384 gacgtcgtgacctgggttcgaacccagaacctcacaattgtgtgtgagtttaatttcagcggattaccacttcatct 38257308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 55018115 - 55018040
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatc 266  Q
    ||||| |||||| | ||||||| |||  | |||||||||||||||||||||| ||||| |||||||||||||||||    
T  55018115 gacgtcgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatc 55018040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 7824505 - 7824459
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  7824505 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 7824459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 9349727 - 9349681
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  9349727 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 9349681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 29689533 - 29689487
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  29689533 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 29689487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 36229045 - 36228999
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||    
T  36229045 ctcacagttgtgtgtgagtttattttcaatggattaccacttcatct 36228999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 54158343 - 54158389
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  54158343 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 54158389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 4601487 - 4601548
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||| || |||||||||||||||||||||| ||||| |||||||||| |||||||    
T  4601487 gttcgaacccggaacctcacagttgtgtgtgagtttattttcagtggattaccagttcatct 4601548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 28844551 - 28844628
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagttta-atttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| | | || ||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  28844551 gacgttgtgacccgggttcgaacctggaacctcacagttgtgtgtgagtttatttttcagtggattaccacttcatct 28844628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 51665999 - 51665930
Alignment:
Q  199 tgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||||||| |||  | || ||||||||||||||||||| ||||| ||||||||||||||||||    
T  51665999 tgacctgggttcgaacccgggaccttacagttgtgtgtgagtttattttcagtggattaccacttcatct 51665930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 52500900 - 52500961
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| | |||| |||||||||||||||||||||| ||||| | ||||||||||||||||    
T  52500900 gttcgaacctgaaacctcacagttgtgtgtgagtttattttcagtagattaccacttcatct 52500961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 27230744 - 27230791
Alignment:
Q  223 tcacagttgtgtgtgagtttaatttca-tggattaccacttcatctca 269  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||    
T  27230744 tcacagttgtgtgtgaatttaatttcagtgaattaccacttcatctca 27230791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 42392856 - 42392810
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  42392856 ctcacaattgtgtgtgagtttaatttcagtggtttaccacttcatct 42392810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 54151732 - 54151686
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  54151732 ctcacagttgtgtatgagtttattttcagtggattaccacttcatct 54151686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 55320451 - 55320405
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  55320451 ctcatagttgtgtgtgagtttattttcagtggattaccacttcatct 55320405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 475331 - 475286
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttcatggattaccacttcatct 267  Q
    |||||||||||||||||||||||||   || |||||||||||||||    
T  475331 ctcacagttgtgtgtgagtttaattcagtgaattaccacttcatct 475286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 8151410 - 8151471
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    ||||||| |||| ||||||||||| ||||| ||||||||||| ||||||||||  |||||||    
T  8151410 gttcgaacccgagatctcacagttatgtgtcagtttaatttcaatggattaccggttcatct 8151471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 1778902 - 1778974
Alignment:
Q  196 ttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||| | ||||||| ||| || |||||| |||||| ||| |||| ||||| ||||||||||||||||||    
T  1778902 ttgtgacccgggttcgaacccggaacctcacaattgtgtttgaatttattttcaatggattaccacttcatct 1778974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 35461560 - 35461504
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttc 248  Q
    |||||||||| | | ||||||| ||| || |||||||||||||||||||||| ||||    
T  35461560 gacgttgtgatccgggttcgaacccggaacctcacagttgtgtgtgagtttattttc 35461504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 40756792 - 40756732
Alignment:
Q  208 ttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||| |||| | |||||||||| ||||||||||||||||| | | ||||||||||||||    
T  40756792 ttcgaacccgagacctcacagttgcgtgtgagtttaatttcagtagtttaccacttcatct 40756732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 47635082 - 47635010
Alignment:
Q  196 ttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||| ||||||||||   | ||| ||||| ||||| |||||||||||| | ||||||||||||||||    
T  47635082 ttgtgacctgggttcgaatccaggacctcgcagttatgtgtaagtttaatttcagttgattaccacttcatct 47635010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 28817303 - 28817379
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  28817303 gacgttgtgacccgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 28817379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 32333161 - 32333237
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  32333161 gacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 32333237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 35779578 - 35779502
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  35779578 gacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 35779502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 40932772 - 40932832
Alignment:
Q  208 ttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||||||    
T  40932772 ttcgaatccgaaatctcacagttgtgtgtgactttaattttagtagattaccacttcatct 40932832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 41849312 - 41849237
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttcatggattaccacttcatct 267  Q
    ||||| |||| ||| ||||||||||| || ||||| ||||||||||||||||||||||  |||||||| |||||||    
T  41849312 gacgtcgtgatctgggttcgaatccggaacctcactgttgtgtgtgagtttaatttcagtgattaccatttcatct 41849237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 31532176 - 31532130
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  31532176 ctcacagttgtgtgtgagtttaatttcagtggattaccacttcatct 31532130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 42192705 - 42192644
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| |||  |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  42192705 gttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 42192644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 42885236 - 42885297
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| |||  |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  42885236 gttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 42885297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 1421 - 1345
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||   ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  1421 gacgttgtgaccctggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 1345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 7792708 - 7792784
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||  | ||||||| |||  |||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  7792708 gacgttgtgactcgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattactacttcatct 7792784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 70574 - 70528
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  70574 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 70528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 1078699 - 1078653
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  1078699 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 1078653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 6602569 - 6602523
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  6602569 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 6602523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 6678022 - 6677976
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  6678022 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 6677976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 7813399 - 7813445
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  7813399 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 7813445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 42364764 - 42364726
Alignment:
Q  211 gaatccgaaatctcacagttgtgtgtgagtttaatttca 249  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  42364764 gaatccgaaatttcacagttgtgtgtgagtttaatttca 42364726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 9292096 - 9292141
Alignment:
Q  223 tcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  9292096 tcacagttgtgtgtgagtttattttcagtggattaccacttcatct 9292141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 3822443 - 3822515
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttc 263  Q
    |||||||||||| | ||||||| ||   |||||||||||||||||||||||||||| | || |||||||||||    
T  3822443 gacgttgtgacccgggttcgaacccaggatctcacagttgtgtgtgagtttaattttagtgaattaccacttc 3822515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 7403760 - 7403700
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttcatggattaccacttcatct 267  Q
    |||||||||||| |  |||||||||| |||||| |||||||||  ||||||||||||||||    
T  7403760 gttcgaatccgagacatcacagttgtttgtgagcttaatttcagtgattaccacttcatct 7403700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 20269605 - 20269653
Alignment:
Q  220 atctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  20269605 atctcacagttgtgtgtgagtttattttcaatggattaccatttcatct 20269653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 21056234 - 21056282
Alignment:
Q  220 atctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  21056234 atctcacagttgtgtgtgagtttattttcaatggattaccatttcatct 21056282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 29425426 - 29425474
Alignment:
Q  220 atctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||    
T  29425426 atctcgcaattgtgtgtgagtttaatttcagtggattaccacttcatct 29425474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 39303386 - 39303433
Alignment:
Q  222 ctcacagttgtgtgtgag-tttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  39303386 ctcacagttgtgtgtgagttttaatttcagtggattaccacttcatct 39303433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 4531033 - 4530987
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  4531033 ctcacagctgtgtgtgagtttaatttcagtggtttaccacttcatct 4530987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 9775117 - 9775047
Alignment:
Q  198 gtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaattt-catggattaccacttcatct 267  Q
    |||| ||| ||||||| ||| || ||||||||| ||||||||||||||||  ||||||||| |||||||||    
T  9775117 gtgatctgggttcgaacccggaacctcacagttatgtgtgagtttaatttgaatggattacaacttcatct 9775047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 13891167 - 13891213
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  13891167 ctcacagttgtgtgtgagtttattttcagtggtttaccacttcatct 13891213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 31695320 - 31695274
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||    
T  31695320 ctcacaattgtgtgtgagtttaatttcaatggtttaccacttcatct 31695274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 45264691 - 45264649
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttc 263  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  45264691 ctcacagttttgtgtgagtttaatttcagtggattaccacttc 45264649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 39435344 - 39435405
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaattt-catggattaccacttcatct 267  Q
    ||||||| |||| | ||||||||||||||||||||||||||   |||||||| |||||||||    
T  39435344 gttcgaacccgagacctcacagttgtgtgtgagtttaatttatgtggattacgacttcatct 39435405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 41753045 - 41753004
Alignment:
Q  208 ttcgaatccgaaatctcacagttgtgtgtgagtttaatttca 249  Q
    |||||| || ||||||||||||||||||| ||||||||||||    
T  41753045 ttcgaacccaaaatctcacagttgtgtgtaagtttaatttca 41753004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 5385415 - 5385459
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcat 265  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||    
T  5385415 ctcacagttgtgtgtgagtttaatttcagtgatttaccacttcat 5385459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 35945844 - 35945920
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||| ||||||| ||| || ||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  35945844 gacgttgtgacctgggttcgaacccggaacctcacagttgtgtgtgaatttattttcagtggattaccacttcatct 35945920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 28455921 - 28455997
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  28455921 gacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 28455997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 48660069 - 48660145
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||| ||||| | ||||||| |||  |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  48660069 gacgttatgacccgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 48660145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 13109847 - 13109893
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  13109847 ctcacagttgtgtgtgagtttaatttcagtggattaccacttcatct 13109893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 7059513 - 7059590
Alignment:
Q  191 agacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||| |||||| | ||||||||| || | |||||||||||||||||||||||||| | ||||||||||||| ||||    
T  7059513 agacgtcgtgacccgggttcgaatctgagacctcacagttgtgtgtgagtttaatttaagtggattaccactttatct 7059590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 41808264 - 41808325
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||| || |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  41808264 gttcgaacccggaacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 41808325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 41761492 - 41761417
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatc 266  Q
    |||||||||||| | ||||||| ||   | |||||||||||||||||||||| ||||| |||||||||||||||||    
T  41761492 gacgttgtgacccgggttcgaacccaggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatc 41761417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 5055839 - 5055793
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  5055839 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 5055793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 32007151 - 32007197
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  32007151 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 32007197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 39276397 - 39276471
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcat 265  Q
    |||||||||||| | ||||||| |||  | ||||||||| |||||||||||| ||||| ||||||||||||||||    
T  39276397 gacgttgtgacccgggttcgaacccgggacctcacagttatgtgtgagtttattttcagtggattaccacttcat 39276471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 41039354 - 41039308
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  41039354 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 41039308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 45813062 - 45813016
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  45813062 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 45813016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 29994449 - 29994388
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| |||| | |||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  29994449 gttcgaacccgagacctcacaattgtgtgtgagtttaatttcagtggtttaccacttcatct 29994388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 192462 - 192538
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||| | ||||||||| ||   | |||||||||||||||||||||| |||||  |||||||||||||||||    
T  192462 gacgttgtgatccgtgttcgaacccaggacctcacagttgtgtgtgagtttattttcagcggattaccacttcatct 192538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 26032848 - 26032924
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||| | ||||||| | | || ||||||||| |||||||||||||||||| ||||||||| ||||||||    
T  26032848 gacgtcgtgacccgggttcgaacctggaacctcacagttttgtgtgagtttaatttcagtggattaccgcttcatct 26032924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 26264601 - 26264541
Alignment:
Q  208 ttcgaatccgaaatctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    |||||| | |||| ||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  26264601 ttcgaacctgaaacctcacagttgtgtgtgagtttaatttcaatgtattatcacttcatct 26264541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 20825 - 20871
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||| | ||||||||||||||||||    
T  20825 ctcacagttgtgtgtgagtttatttttagtggattaccacttcatct 20871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 5943758 - 5943804
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  5943758 ctcacagttgtttgtgagtttaatttcaatggattatcacttcatct 5943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 13097381 - 13097427
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||||    
T  13097381 ctcacagttgtatgtgagtttaattttattggattaccacttcatct 13097427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 7275759 - 7275804
Alignment:
Q  223 tcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||||    
T  7275759 tcacagttgtgtatgagtttaatttcagtggtttaccacttcatct 7275804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 25931207 - 25931162
Alignment:
Q  223 tcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||    
T  25931207 tcacaattgtgtgtgagtttaatttcaatagattaccacttcatct 25931162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 49783769 - 49783830
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||| || ||||||||||| ||||| |||||||||| ||| ||||||||||||||    
T  49783769 gttcgaacccggaacctcacagttgtatgtgaatttaatttcagtggtttaccacttcatct 49783830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 11688345 - 11688385
Alignment:
Q  227 agttgtgtgtgagtttaatttca-tggattaccacttcatc 266  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  11688345 agttgtgtgtgagtttattttcagtggattaccacttcatc 11688385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 56528 - 56604
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  56528 gacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 56604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 11355898 - 11355946
Alignment:
Q  220 atctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11355898 atctcacagttgtgtgtgagtttaatttcagtggattaccacttcatct 11355946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 44083987 - 44084063
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  44083987 gacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 44084063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 5772895 - 5772826
Alignment:
Q  197 tgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcat 265  Q
    ||||||| | |||||||  ||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  5772895 tgtgacccgggttcgaactcgaaacctcacagttgtgtgtgagtttaatttcagtggtttaccacttcat 5772826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 25546341 - 25546280
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||  | |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  25546341 gttcgaatccgggacctcacagttgtgtgtgagtttaatttcagtggtttaccacttcatct 25546280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 31288290 - 31288229
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||| | |||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  31288290 gttcgaatctggaatctcacagttgtgtgtaagtttaatttcagtggtttaccacttcatct 31288229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 43753835 - 43753758
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgag-tttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||||| ||||||| ||| || ||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  43753835 gacgtcgtgacctgggttcgaacccggaacctcacagttgtatgtgagttttaatttcagtggattaccacttcatct 43753758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 47570784 - 47570723
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| |||  |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  47570784 gttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 47570723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 2146683 - 2146759
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| || | | |||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  2146683 gacgttgtgacccgggttcgaacccaagacctcacagttgtgtgtgggtttattttcagtggattaccacttcatct 2146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 40058285 - 40058361
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  | ||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  40058285 gacgttgtgacccgggttcgaacccgggacctcacagttgtgtatgagtttattttcagtggattaccacttcatct 40058361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 27229559 - 27229484
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgag-tttaatttca-tggattaccacttcat 265  Q
    ||||| |||||||| ||||||| |||  | |||||||||||||||||| |||||||||| ||||||||||||||||    
T  27229559 gacgtcgtgacctgggttcgaacccgggacctcacagttgtgtgtgagttttaatttcagtggattaccacttcat 27229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 4106815 - 4106861
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  4106815 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 4106861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 4107386 - 4107432
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  4107386 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 4107432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 10220538 - 10220496
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca 249  Q
    |||||||||||||| ||||||||| ||||||||||||||||||    
T  10220538 gttcgaatccgaaacctcacagttttgtgtgagtttaatttca 10220496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 19630723 - 19630673
Alignment:
Q  218 aaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  19630723 aaatatcacagttgtgtgtgagtttattttcagtggattaccacttcatct 19630673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 23358262 - 23358308
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  23358262 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 23358308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 31770583 - 31770537
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  31770583 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 31770537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 38781259 - 38781213
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  38781259 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 38781213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 46427423 - 46427477
Alignment:
Q  208 ttcgaatccgaaatctcacagttgtgtgtgagtttaatttcatggattaccactt 262  Q
    |||||||||| || ||||||||||||||||||||||||||||  | |||||||||    
T  46427423 ttcgaatccggaacctcacagttgtgtgtgagtttaatttcagtgtttaccactt 46427477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 25112321 - 25112252
Alignment:
Q  199 tgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||||||| |||  | |||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  25112321 tgacctgggttcgaacccgggacctcacagttgtgtgtgggtttattttcagtggattaccacttcatct 25112252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 34763519 - 34763560
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccactt 262  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  34763519 ctcacagttgtgtgtgagtttaatttcagtggattaccactt 34763560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 47557843 - 47557904
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||| || ||||||||||| |||||||||||||||| ||| ||||||||||||||    
T  47557843 gttcgaacccggaacctcacagttgtatgtgagtttaatttcagtggtttaccacttcatct 47557904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 5463003 - 5462955
Alignment:
Q  220 atctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  5463003 atctcacagttgtgtgtgagtttaatttcaatggagaaccacttcatct 5462955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 27915633 - 27915585
Alignment:
Q  220 atctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  27915633 atctcacagttgtgtatgagtttaatttcaatgaattaccacttcatct 27915585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 28603058 - 28603134
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||||| ||||||| |||| |  ||||| |||| |||||||||||| ||| ||||||||||||||||||    
T  28603058 gacgtcgtgacctgagttcgaacccgagacttcacaattgtatgtgagtttaatctcagtggattaccacttcatct 28603134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 8439155 - 8439201
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  8439155 ctcacagttgtgtgtgaatttattttcagtggattaccacttcatct 8439201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 38033806 - 38033852
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||||    
T  38033806 ctcacagttgtgtgtgagtttattttcagtggagtaccacttcatct 38033852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 48146830 - 48146876
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||    
T  48146830 ctcacagttgtgtgtgagttaattttcattggattaccacttcatct 48146876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 15634929 - 15634884
Alignment:
Q  223 tcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||    
T  15634929 tcacagttgtgtgtgagtttattttcagtagattaccacttcatct 15634884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 35309908 - 35309977
Alignment:
Q  199 tgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||  ||||||||||  |||||||| ||||||| ||||||||||||| ||| ||| ||||||||||    
T  35309908 tgacctggtttcgaatccgggatctcacaattgtgtgcgagtttaatttcagtggtttatcacttcatct 35309977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 41183869 - 41183938
Alignment:
Q  199 tgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||||||| || | | ||||||||| |||||||||||| ||||| ||||||| ||||||||||    
T  41183869 tgacctgggttcgaacccaatacctcacagttatgtgtgagtttattttcagtggattatcacttcatct 41183938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 47250297 - 47250256
Alignment:
Q  227 agttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  47250297 agttgtgtgtgagtttattttcagtggattaccacttcatct 47250256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 48444202 - 48444157
Alignment:
Q  223 tcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||| |||||||||||| || |||||||||||||||    
T  48444202 tcacagttgtgtgtaagtttaatttcagtgaattaccacttcatct 48444157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 39514064 - 39513988
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    ||||| |||||| | ||||||| |||  | || |||||| |||||||||||||||||  ||||||||||||||||||    
T  39514064 gacgtcgtgacccgagttcgaacccgggaccttacagttatgtgtgagtttaatttcggtggattaccacttcatct 39513988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 21018270 - 21018346
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  21018270 gacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 21018346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 2971030 - 2971107
Alignment:
Q  191 agacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    ||||||||||||| | ||||||| | || | |||||||||||||||||||||| ||||  ||||||||||||||||||    
T  2971030 agacgttgtgacccgggttcgaacctgagacctcacagttgtgtgtgagtttattttcggtggattaccacttcatct 2971107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 41580141 - 41580080
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaa-tttcatggattaccacttcatct 267  Q
    |||||||||||||| |||||||||||||||  |||||| ||| |||||||||||||||||||    
T  41580141 gttcgaatccgaaacctcacagttgtgtgtaggtttaattttaatggattaccacttcatct 41580080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 35317778 - 35317702
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||| ||||||| | ||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  35317778 gacgttatgacctggggtcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 35317702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 4824990 - 4824944
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||    
T  4824990 ctcacagttgtgtgtgagtttattttcaatggattaccacttcatct 4824944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 29265952 - 29265998
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  29265952 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 29265998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 31909436 - 31909390
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  31909436 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 31909390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 32143465 - 32143419
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  32143465 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 32143419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 12257402 - 12257479
Alignment:
Q  191 agacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||||| ||||||| ||   | |||| | ||||||||||||||| ||||| ||||||||||||||||||    
T  12257402 agacgttgtgacctgggttcgaacccaggacctcataattgtgtgtgagtttattttcagtggattaccacttcatct 12257479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 13204004 - 13204080
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||| | ||||||| |||  | ||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  13204004 gacgtcgtgacccgggttcgaacccgggacctcacagttatgtgtgagtttattttcagtggattaccacttcatct 13204080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 40177671 - 40177747
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||||  ||| || ||| ||  |||| |||||||||||||||| ||||| ||||||||||||||||||    
T  40177671 gacgttgtgacctggattccaacccggaacttcaccgttgtgtgtgagtttattttcagtggattaccacttcatct 40177747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 23262624 - 23262667
Alignment:
Q  225 acagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  23262624 acagttgtgtgtgagtttattttcagtggattaccacttcatct 23262667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 2786348 - 2786393
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttcatggattaccacttcatct 267  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||    
T  2786348 ctcacagttgtgtatgagtttaattcagtggattaccacttcatct 2786393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 17984808 - 17984747
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||| || |||||||||||||||||||||||||| | ||| ||| ||||||||||    
T  17984808 gttcgaacccggaacctcacagttgtgtgtgagtttaattttagtggcttatcacttcatct 17984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 6021039 - 6021115
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| |  |||||| |||  | ||| |||||||||||||||||| ||||| ||||||||||||| ||||    
T  6021039 gacgttgtgacccggattcgaacccgggacctctcagttgtgtgtgagtttattttcagtggattaccactttatct 6021115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 23839906 - 23839982
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||| ||||||| | |  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  23839906 gacgttgtgacctgggttcgaacctgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 23839982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 34460416 - 34460492
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| ||  || |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  34460416 gacgttgtgacccgggttcgaacccagaacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 34460492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 45125246 - 45125170
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||| || |||||||  || || |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  45125246 gacgttgtgacttgggttcgaactcggaacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 45125170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 11816632 - 11816555
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgag-tttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||||| ||||||| ||| || ||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  11816632 gacgtcgtgacctgggttcgaacccggaacctcacagttgtatgtgagttttaatttcagtggattaccacttcatct 11816555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 19537354 - 19537430
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||| | | ||||||| ||| || |||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  19537354 gacgttgtgatccgggttcgaacccggaacctcacagttgtgtgtgtgtttattttcagtggattaccacttcatct 19537430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 26605671 - 26605747
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| |||  | ||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  26605671 gacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgaatttattttcagtggattaccacttcatct 26605747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 37197691 - 37197615
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||| | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  37197691 gacgtcgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 37197615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 10639657 - 10639611
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  10639657 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 10639611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 29659269 - 29659223
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  29659269 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 29659223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 33083605 - 33083559
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33083605 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 33083559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 42578245 - 42578291
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  42578245 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 42578291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 4851397 - 4851442
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatc 266  Q
    |||||||||||||||||||||||||| | |||||||||||||||||    
T  4851397 ctcacagttgtgtgtgagtttaattttagtggattaccacttcatc 4851442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 43778518 - 43778473
Alignment:
Q  223 tcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  43778518 tcacagttgtgtgtgagtttattttcattggattaccacttcatct 43778473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 11708725 - 11708801
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||| | ||||||| ||   | |||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  11708725 gacgttgtgacccgggttcgaacccaggacctcacagttgtgtgtgggtttattttcagtggattaccacttcatct 11708801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 44181952 - 44181892
Alignment:
Q  208 ttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||||||  |||||||||||||||||||||||| ||||| ||||||| ||||| ||||    
T  44181952 ttcgaatccgggatctcacagttgtgtgtgagtttattttcagtggattatcacttaatct 44181892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 11459792 - 11459838
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||    
T  11459792 ctcacagttgtgtgtgtgtttattttcaatggattaccacttcatct 11459838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 27137993 - 27137923
Alignment:
Q  198 gtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||| ||||||| |||  | || |||||| | |||||||||||||||| ||||||||||||||||||    
T  27137993 gtgacctgggttcgaacccgggaccttacagttttatgtgagtttaatttcagtggattaccacttcatct 27137923  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 39831495 - 39831449
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  39831495 ctcacaattgtgtgtgagtttaatttcagtggtttaccacttcatct 39831449  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 40825224 - 40825163
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttc-atggattaccacttcatct 267  Q
    |||||||||||| ||||  ||| |||||||||||||| |||| |||||||| ||||||||||    
T  40825224 gttcgaatccgagatcttccaggtgtgtgtgagtttattttcaatggattatcacttcatct 40825163  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 4800923 - 4800999
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||| |||||||| ||||||| ||| || ||| | ||| ||||||||||||||| || || |||||||||||||||    
T  4800923 gacgtcgtgacctgagttcgaacccggaacctcgcggttatgtgtgagtttaattccagtgaattaccacttcatct 4800999  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 10999471 - 10999416
Alignment:
Q  210 cgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttca 264  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  10999471 cgaatccaaaatctcacagttgtatgtgagtttaatttcagtggattaccacttca 10999416  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 4464204 - 4464250
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  4464204 ctcacagttgtgtgtgagtttaatttcagtggtttaccacttcatct 4464250  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 33621571 - 33621617
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  33621571 ctcacagttgtgtgtgagtttaatttcagtggtttaccacttcatct 33621617  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 35218691 - 35218645
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  35218691 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 35218645  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 2959211 - 2959272
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaattt-catggattaccacttcatct 267  Q
    ||||||| |||| | |||||||||||||||||||||||||| | |||| |||||||||||||    
T  2959211 gttcgaacccgagacctcacagttgtgtgtgagtttaatttccgtggaataccacttcatct 2959272  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 21037338 - 21037413
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||  | ||||||||||| |  |||||||||||||||||||||| ||||| || |||||||||||||||    
T  21037338 gacgttgtgactcgggttcgaatccggac-ctcacagttgtgtgtgagtttattttcagtgaattaccacttcatct 21037413  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 33704293 - 33704337
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcat 265  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  33704293 ctcacagttgtgtgtgagtttattttcagtggattaccacttcat 33704337  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 19145547 - 19145593
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||| |||||||||| |||||||||| ||||||||||||||||||    
T  19145547 ctcacaattgtgtgtgaatttaatttcagtggattaccacttcatct 19145593  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 361073 - 361134
Alignment:
Q  207 gttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||| || ||||||||| | |||||||||||||||| ||||||| ||||||||||    
T  361073 gttcgaacccggaacctcacagttatatgtgagtttaatttcagtggattaacacttcatct 361134  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 21000746 - 21000815
Alignment:
Q  199 tgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    ||||||| ||||||| |||  | |||||| ||||||||| ||||||||||| ||| ||||||||||||||    
T  21000746 tgacctgggttcgaacccgggacctcacaattgtgtgtgggtttaatttcagtggtttaccacttcatct 21000815  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 17590447 - 17590391
Alignment:
Q  188 gctagacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaa 244  Q
    |||||||||||||||  | ||||||| ||| |  |||||||||||||||||||||||    
T  17590447 gctagacgttgtgactcgggttcgaacccggagcctcacagttgtgtgtgagtttaa 17590391  T

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Target: scaffold0119 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 14032 - 13956
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||| | | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  14032 gacgttgtgatccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 13956  T

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Target: scaffold0119; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 19712 - 19636
Alignment:
Q  192 gacgttgtgacctgtgttcgaatccgaaatctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||| | | ||||||| |||  | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  19712 gacgttgtgatccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 19636  T

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Target: scaffold1348 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 913 - 867
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  913 ctcacagttgtgtgtgagtttattttcagtggattaccacttcatct 867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 22240 - 22286
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  22240 ctcacagttgcgtgtgagtttaatttcagtggattaccacttcatct 22286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 8994 - 8948
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||    
T  8994 ctcacagttgtgtgtgagtttaatttcagtgatttaccacttcatct 8948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 10024 - 9978
Alignment:
Q  222 ctcacagttgtgtgtgagtttaatttca-tggattaccacttcatct 267  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  10024 ctcatagttgtgtgtgagtttattttcagtggattaccacttcatct 9978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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