View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_high_96 (Length: 267)
Name: NF0836_high_96
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_high_96 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 51688803 - 51688995
Alignment:
| Q |
37 |
caacaaaatggtcaagtaaataaatatatttatcttggttgttggctaggggtgagaacatgctattctgaattttgatgcagctgagcctgagcctgag |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51688803 |
caacaaaatggtcaagtaaataaatatatttatcttggttgttggctaggggtgagaacatgctattctgaattttgatgcagctga------------g |
51688890 |
T |
|
| Q |
137 |
cctgagccacataatatattacagtaaggacactgaactgtatatgtaaaatttataaacaacctgcagaagaggtagctacagaaaaaggttgatatat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51688891 |
cctgagccacataatatattacagtaaggacactgaactgtatatgtaaaatttataaacaacctgcagaagaggtagctacagaaaaaggttgatatat |
51688990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 150 times since January 2019
Visitors: 6051