View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_1 (Length: 1098)
Name: NF0836_low_1
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 812; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 99 - 1016
Target Start/End: Original strand, 6145876 - 6146795
Alignment:
| Q |
99 |
ttttctctaccaaagctgctactatcattgttaaaactgaaaaaaccattccagcaccgatcctttgaagaatgttcatccctctttcattgccgcttat |
198 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6145876 |
ttttctcgaccaaagctgctactatcattgttaaaaccgaaaaaaccattccaataccaatcctttgaagaatgttcatccctctttcattgccacttat |
6145975 |
T |
|
| Q |
199 |
ttttcttaaaaccggtacgaggattttgtcgtagattgcgacagaaattatcataccaatagcggaaatagtgaaaattgaagctggtggaatctcaaaa |
298 |
Q |
| |
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|||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
6145976 |
ttttcttaaaactggcacgaggattttgtcgtaaattgcgacagaaattatcataccaatagcggaaatagtgaaaattgaagcgggtggaatctcgaaa |
6146075 |
T |
|
| Q |
299 |
ccatgtcctatttttctattcattatattaccttgcttgataaagaaagttgatgtttgtgcagcacacattccaaatggtaaagtaaatatccaaattg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6146076 |
ccatgtcctatttttctattcattatattaccttgcttgataaagaaagttgatgtttgtgcagcacacattccaaatggtaaagtaaatatccaaattg |
6146175 |
T |
|
| Q |
399 |
ggatcatgttgatcataagcttcatttcttcaactctagtgactgttgctagtttccatggactttgttcctttgctaaatttccttcactttcaactat |
498 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6146176 |
ggatcatgttgatcataagcttcatttcttcaactctagtgactgttgctagtttccatggactttgttcctttgctaaatttccttcactttcaactat |
6146275 |
T |
|
| Q |
499 |
tgctgccttgtcaaaaaatctgaaaaagaaatgtaccatcaaataatttatgattacttgtttaccaagttattgcatttcatttaagatgagatcctca |
598 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6146276 |
tgctgccttgtcaaaaaatctgaaaaagaaatgtaccatcaaataatttatgattacttgtttaccaagttattgcatttcatttaagatgagatcctca |
6146375 |
T |
|
| Q |
599 |
ctacattttggaatggaacttgatcaaaagaaatgggactaccgtgaaaacaagacgctctagttttaaaaataccagtgatcatgtccgtaattgaaac |
698 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6146376 |
ctacattttagaatggaacttgatcaaaacaaatgggactaccgtgaaaacaagacgctctagttttaaaaataccagtgatcatgtccgtaattgaaac |
6146475 |
T |
|
| Q |
699 |
tttgattgt-aagactcgtcttttcctacata-nnnnnnnncttttcaatttgaataatagtaatttaaaatcattaatgaaatacttacttgagtttct |
796 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6146476 |
tttgattgtaaagactcgtcttttcctacatatatattttttttttcaatttgaataatagtaatctaaaatcattaatgaaatacttacttgagtttct |
6146575 |
T |
|
| Q |
797 |
tggtatgagccaaaagtcttccattattcccctcagccttagaaacttcatacaattgagttggattagaaggataaggaagctttctcttagaaattgc |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6146576 |
tggtatgagccaaaagtcttccattattcccctcagccttagaaacttcatacaattgagttggattagaaggataaggaagctttctcttagaaattgc |
6146675 |
T |
|
| Q |
897 |
agcaacaataacttgcaacattggagccaaagggcttccatttggtatcctataacgataaaatttgcttccaatcacaaaaataagcaaagagaaagtc |
996 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6146676 |
tgcaacaataacttgcaacattggagtcaaagggcttccatttggtatcctataacgataaaatttgcttccaatcacaaaaataagcaaagagaaagtc |
6146775 |
T |
|
| Q |
997 |
ataacacatgtgagaataat |
1016 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
6146776 |
ataacacatgtgagaataat |
6146795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 99 - 524
Target Start/End: Original strand, 23692681 - 23693106
Alignment:
| Q |
99 |
ttttctctaccaaagctgctactatcattgttaaaactgaaaaaaccattccagcaccgatcctttgaagaatgttcatccctctttcattgccgcttat |
198 |
Q |
| |
|
||||||||| |||||||| ||||||||||| | || | |||| ||||||| ||| ||||||||||| ||||| || ||||||||||| |||| |
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|
| T |
23692681 |
ttttctctattaaagctgccactatcattgtaataatagtgaaaaacattccaaaaccaatcctttgaaggatgttaattcctctttcattttgatttat |
23692780 |
T |
|
| Q |
199 |
ttttcttaaaaccggtacgaggattttgtcgtagattgcgacagaaattatcataccaatagcggaaatagtgaaaattgaagctggtggaatctcaaaa |
298 |
Q |
| |
|
||||||||| | ||||| || || ||||| || || || |||||||||||||| || | || | || |||||||||||||||||||||| ||||| |
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| T |
23692781 |
ttttcttaacataggtactagaatcttgtcataaatggccacagaaattatcattcctaaggcagcaactgtgaaaattgaagctggtggaagttcaaac |
23692880 |
T |
|
| Q |
299 |
ccatgtcctatttttctattcattatattaccttgcttgataaagaaagttgatgtttgtgcagcacacattccaaatggtaaagtaaatatccaaattg |
398 |
Q |
| |
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| | ||||| ||||||||||||||| || ||| ||||| ||||| |||||||||||||| ||| ||||||||||||| ||| |||| |||||||| |
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|
| T |
23692881 |
ctttcacctatctttctattcattatagcactttgtttgatgaagaatgttgatgtttgtgctacacttattccaaatggtatagtgaatacccaaattg |
23692980 |
T |
|
| Q |
399 |
ggatcatgttgatcataagcttcatttcttcaactctagtgactgttgctagtttccatggactttgttcctttgctaaatttccttcactttcaactat |
498 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||||||| |||| || |||| ||| |||||||||||||| | || | | ||||||| || |||||| ||| |
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|
| T |
23692981 |
gtatcatattgattataagcttcatttcttcaactgtagttacagttgttagcttccatggactttgcttctctattgaatttccatcgttttcaattat |
23693080 |
T |
|
| Q |
499 |
tgctgccttgtcaaaaaatctgaaaa |
524 |
Q |
| |
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||||||||||||| ||||||||||| |
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|
| T |
23693081 |
agctgccttgtcaagaaatctgaaaa |
23693106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 834 - 959
Target Start/End: Original strand, 23693730 - 23693855
Alignment:
| Q |
834 |
cttagaaacttcatacaattgagttggattagaaggataaggaagctttctcttagaaattgcagcaacaataacttgcaacattggagccaaagggctt |
933 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||| |||||| || |
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|
| T |
23693730 |
cttagaaacctcatacaattgatcaggattagaaggataaggaagcttccttttagaaaaggcagcaacaagaacttgcaacattggagtcaaaggactc |
23693829 |
T |
|
| Q |
934 |
ccatttggtatcctataacgataaaa |
959 |
Q |
| |
|
||| |||||| ||||||||||||||| |
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|
| T |
23693830 |
ccacttggtaccctataacgataaaa |
23693855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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