View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_10 (Length: 706)
Name: NF0836_low_10
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_10 |
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| [»] scaffold0246 (1 HSPs) |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: scaffold0246 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 33 - 699
Target Start/End: Complemental strand, 13875 - 13209
Alignment:
| Q |
33 |
agaaccaacatcagaggcggaagtatgaaaatgatcctattatttgcatccgtcacaccaaacttaaccattgatccttcagtgaacttacgtgctttgc |
132 |
Q |
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| T |
13875 |
agaaccaacatcagaggcggaagtatgaaaatgatcctattatttgcatccgtcacaccaaacttaaccattgatcctttagtgaacttacgtgctttgc |
13776 |
T |
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| Q |
133 |
aaatttgtttccactgcccataaatgatgcacggaagatccttgccattactgaacttcatgttacattttcagctataccccaagtaatcaactatcgt |
232 |
Q |
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| T |
13775 |
aaatttgtttccactgcccataaatgatgtacggaagatccttgccattactgaacttcatgttacatttccagctataccgcaagtaatcaactatcgg |
13676 |
T |
|
| Q |
233 |
cagttcggtcgcttcagcaggcaaaacagactgacgaaatccaagccaaaccagctcctgtttacaaccaagaaatggaaacgttaagataaggaaaaaa |
332 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
13675 |
cagttcggtcgcttcagcagacaaaacagactgacaaaatccaagccaaaccagctcatgtttacaaccaagatatggaaacattaagataaggaaaaaa |
13576 |
T |
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| Q |
333 |
gttgcattaagaaaaagtatacaaacttattcgaaacatatctcaccaaatttccagagtccacatcagaagctgtcaactgtttctgaatggagtggta |
432 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13575 |
gttgcattaacaaaaagtatacaaacttattcaaaacatatctcaccaaatttccagagtccacatcagaagctgtcaactgtttctgaatggtgtggta |
13476 |
T |
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| Q |
433 |
aaatttctttggaagaacaaaaaagcaagagcattaggaatggtagtgttccctgcagagcttagggacatgtgtttcaaaagaaatctcttcggaggac |
532 |
Q |
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| T |
13475 |
aaatttctttggaagaacaaaaaagcaagagcattaggaatggtagtgttccctgcagagcttggggacatgtgtttcaaaagaaatctcttcggaggac |
13376 |
T |
|
| Q |
533 |
tgaacctaggatagaggaattccctttctttcctagtaactccacgaaagagaaataggttgcgatttgcatatatcacagtcatccaagagcaagcagt |
632 |
Q |
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| T |
13375 |
tgaacctaggatagaggaattccctttctttcctagtaactccacgaaagagaaataggttgcgatttgcatatatcacagtcatccatgagcaagcagt |
13276 |
T |
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| Q |
633 |
gatgatataaaaatccttcattgtagcccatccatcagtgaaatagaacttaccagtcttcatctca |
699 |
Q |
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| T |
13275 |
gatgatataaaaatccttcattgtagcccatccatcagtgaaatagaccttaccattcttcttctca |
13209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 528 - 677
Target Start/End: Original strand, 12537462 - 12537611
Alignment:
| Q |
528 |
aggactgaacctaggatagaggaattccctttctttcctagtaactccacgaaagagaaataggttgcgatttgcatatatcacagtcatccaagagcaa |
627 |
Q |
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||||||| | |||||||||| ||||| ||||||||||||||| || ||||||||||| ||| ||||||||||||||| | ||| ||||||||||| |
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| T |
12537462 |
aggactgtatctaggatagataaattcttcttctttcctagtaacgccgcgaaagagaaagaggaagcgatttgcatatatgagagtgatccaagagcat |
12537561 |
T |
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| Q |
628 |
gcagtgatgatataaaaatccttcattgtagcccatccatcagtgaaata |
677 |
Q |
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| T |
12537562 |
cctaggatattataataatccttcattgaagcccatccatcagtaaaata |
12537611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 626
Target Start/End: Complemental strand, 29122 - 29022
Alignment:
| Q |
526 |
ggaggactgaacctaggatagaggaattccctttctttcctagtaactccacgaaagagaaataggttgcgatttgcatatatcacagtcatccaagagc |
625 |
Q |
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||||||||| | |||||||||| ||||| |||||||| |||||| || ||||||||||| ||| ||||||||||||||| | ||| |||||||||| |
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| T |
29122 |
ggaggactgtatctaggatagataaattcttcttctttccaagtaacgccgcgaaagagaaagaggaagcgatttgcatatatgagagtgatccaagagc |
29023 |
T |
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| Q |
626 |
a |
626 |
Q |
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| T |
29022 |
a |
29022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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