View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_105 (Length: 275)

Name: NF0836_low_105
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_105
NF0836_low_105
[»] chr3 (8 HSPs)
chr3 (30-238)||(19423377-19423588)
chr3 (30-262)||(19412974-19413204)
chr3 (120-238)||(19435760-19435878)
chr3 (121-180)||(18102358-18102417)
chr3 (117-182)||(17949299-17949365)
chr3 (117-182)||(19418872-19418938)
chr3 (132-220)||(19379803-19379894)
chr3 (155-220)||(18107372-18107439)
[»] chr4 (1 HSPs)
chr4 (30-229)||(15529808-15530004)
[»] chr8 (1 HSPs)
chr8 (103-171)||(8457358-8457426)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 19423377 - 19423588
Alignment:
Q  30 atattgtcatatcaaaaaggttcaaataatataattattgttatccacaaaatgttataaattaaacattaagcaatcataataaggttcaaataatttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19423377 atattgtcatatcaaaaaggttcaaataatataattattgttatccacaaaatgttataaattaaacattaagcaatcataataaggttcaaataatttg 19423476  T
Q  130 aaaccaattttaaaacatgaggttcaaagaaatggtataattccaagtctttcctactttatcaaagtcttacttttaatttggagc---tatttaattt 226  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||   |||||||| |    
T  19423477 gaaccaattttaaaacatgaggttcaaagaaatggtttaattccaagtctttcctactttatcaaagtcttgcttttaatgtggagctaatatttaatat 19423576  T
Q  227 ttctctcaatca 238  Q
    |||| |||||||    
T  19423577 ttctatcaatca 19423588  T

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Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 19412974 - 19413204
Alignment:
Q  30 atattgtcatatcaaaaaggttcaaataatataattattgttatccacaaaatgttataaattaaacattaagcaatcataataaggttcaaataatttg 129  Q
    ||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||| |||||||||| | |||||||  ||||||||||||||||||    
T  19412974 atattgtcatatcaaaaaggttcaattaatataatt---gttatccacaaaatgttatatattaaacatttaccaatcatgctaaggttcaaataatttg 19413070  T
Q  130 aaaccaattttaaaacatgaggttcaaagaaatggtataattccaagtctttcctactttatcaaagtcttacttttaatttggagctatttaatttttc 229  Q
     |||||||||||||||||||| |||||||||||  |||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||    
T  19413071 gaaccaattttaaaacatgagcttcaaagaaattctataattccaagtctttcctgctttttcaaagtctttcttttaatttgaagctatttaatttttc 19413170  T
Q  230 tctcaatcaaag-aaatggtgtccacatactttc 262  Q
    | | ||||| ||   ||| |||||||||||||||    
T  19413171 tataaatcatagcctatgttgtccacatactttc 19413204  T

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Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 19435760 - 19435878
Alignment:
Q  120 aaataatttgaaaccaattttaaaacatgaggttcaaagaaatggtataattccaagtctttcctactttatcaaagtcttacttttaatttggagctat 219  Q
    ||||||||||||||||||||||||||||||||| | |||| ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19435760 aaataatttgaaaccaattttaaaacatgaggtacgaagagattctataattccaagtctttcctactttttcaaagtcttacttttaatttggagctat 19435859  T
Q  220 ttaatttttctctcaatca 238  Q
    ||||||||||| |||||||    
T  19435860 ttaatttttctatcaatca 19435878  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 18102358 - 18102417
Alignment:
Q  121 aataatttgaaaccaattttaaaacatgaggttcaaagaaatggtataattccaagtctt 180  Q
    |||||||||  ||||| |||||||||||||||||||||||||  ||| ||||||||||||    
T  18102358 aataatttggcaccaagtttaaaacatgaggttcaaagaaattatattattccaagtctt 18102417  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 17949299 - 17949365
Alignment:
Q  117 ttcaaataatttgaaaccaattttaaaacatgagg-ttcaaagaaatggtataattccaagtctttc 182  Q
    |||||||||||||  ||||| |||||||||||||| |||||||||||  |||||||| |||||||||    
T  17949299 ttcaaataatttggcaccaagtttaaaacatgaggtttcaaagaaattttataattctaagtctttc 17949365  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 19418872 - 19418938
Alignment:
Q  117 ttcaaataatttgaaaccaattttaaaacatgaggtt-caaagaaatggtataattccaagtctttc 182  Q
    |||||||||||||  ||||| ||||||| |||||||| |||||||||  ||||||||||||||||||    
T  19418872 ttcaaataatttggcaccaaatttaaaatatgaggtttcaaagaaattttataattccaagtctttc 19418938  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 19379803 - 19379894
Alignment:
Q  132 accaattttaaaacatgaggttc-aaagaaatggtataattccaagtctttcctactttatcaaagtct--tacttttaatttggagctatt 220  Q
    ||||| ||||||||||||||||  ||| ||||  |||||||||||||||||| | | || |||||||||  || ||||||||||||||||||    
T  19379803 accaagtttaaaacatgaggtttgaaataaattctataattccaagtctttcttgccttttcaaagtcttgtagttttaatttggagctatt 19379894  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 18107372 - 18107439
Alignment:
Q  155 aaagaaatggtataattccaagtctttcctactttatcaaagtct--tacttttaatttggagctatt 220  Q
    ||||||||  |||||||||||||||||| | | || |||||||||  || ||||||||||||||||||    
T  18107372 aaagaaattctataattccaagtctttcttgccttttcaaagtcttgtagttttaatttggagctatt 18107439  T

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Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 15529808 - 15530004
Alignment:
Q  30 atattgtcatatcaaaaaggttcaaataatataattattgttatccacaaaatgttataaattaaacattaagcaatcataataaggttcaaataatttg 129  Q
    ||||| |||||||||||||||||||||||| ||||| ||||   ||||||||| ||||||||||| ||||   ||||||||||| |||||| |||||||     
T  15529808 atattttcatatcaaaaaggttcaaataatttaattgttgt---ccacaaaatattataaattaa-catttgtcaatcataatatggttcacataatttt 15529903  T
Q  130 aaaccaattttaaaacatgaggtt-caaagaaatggtataattccaagtctttcctactttatcaaagtcttacttttaatttggagctatttaattttt 228  Q
     |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  15529904 gaaccaaatttaaaacatgaggtttcaaagaaattgtataattccaagtctttcctcctttttcaaagtcttgcttttaatttggagctatttaattttt 15530003  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 8457358 - 8457426
Alignment:
Q  103 caatcataataaggttcaaataatttgaaaccaattttaaaacatgaggttcaaagaaatggtataatt 171  Q
    ||||| ||||| | |||||| |||| |  ||||| |||||||||||||||||||||||||  |||||||    
T  8457358 caatcttaatatgtttcaaacaattggggaccaagtttaaaacatgaggttcaaagaaattctataatt 8457426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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