View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_113 (Length: 267)
Name: NF0836_low_113
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_113 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 53123502 - 53123247
Alignment:
| Q |
1 |
caattcaccagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactaaacttcttggtattatgaaaggtcttcaatattttcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53123502 |
caattcaccagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactgaacttcttggtattatgaaaggtcttcaatattttcatt |
53123403 |
T |
|
| Q |
101 |
tcacttgtgtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgcttttaaannnnnnncactctt--cacagttaccaagaat |
198 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
53123402 |
tcacttgtgtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgcttttaaatttttttcactcttcacacagttaccaagaat |
53123303 |
T |
|
| Q |
199 |
tgcagtgtaagttctcagtctataattgcctttttcgagttttctattcatgcttc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53123302 |
tgcagtgtaagttctcagtctataattgcctttttcgagttttctattcatgcttc |
53123247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 6504730 - 6504682
Alignment:
| Q |
77 |
tgaaaggtcttcaatattttcatctcacttgtgtgcctcagattttgca |
125 |
Q |
| |
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||||||||||||||||| ||||| | ||||||||||||||||||||||| |
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| T |
6504730 |
tgaaaggtcttcaatatcttcattttacttgtgtgcctcagattttgca |
6504682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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