View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_115 (Length: 267)
Name: NF0836_low_115
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_115 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 16471366 - 16471630
Alignment:
| Q |
1 |
aatttcctcaaccaatgccaattctgttctgtacacaaacatcaagcaaaatacaacacatgtaaagatctcaaatttcacaacggaacaaaccaatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16471366 |
aatttcctcaaccaatgccaattctgttctgtacacaaacatcaagcataatacaacacatgtaaagatctcaaatttcacaacggaacaaaccaatcat |
16471465 |
T |
|
| Q |
101 |
aaaacaatcctaagttgccaaaatgataaagacagttagctgaacgagaggttgacaccacactaggtatatgagtcatctcccttataaagtgttcaac |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16471466 |
aaaacaattctaagttgccaaaatgataaagacagttagctgaatgagaggttgacaccacactaggtatatgagtcatgtcccttataaagtgttcaac |
16471565 |
T |
|
| Q |
201 |
attcagtttt---------tctcaatcaaccataagttttctatcccgttgtactttgtacctttg |
257 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
16471566 |
attcagttttctatctccccctcaatcaaccagaagttttctatcccgttgtac-ttgtacctttg |
16471630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 16464344 - 16464504
Alignment:
| Q |
1 |
aatttcctcaaccaatgccaattctgttctgtacacaaacatcaagcaaaatacaacacatgtaaagatctcaaatttcacaacggaacaaaccaatcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16464344 |
aatttcctcaaccaatgccaattctgttctgtacacaaacatcaagaaaaatacagcacatgtaaagatctcaaatttcacaacggaataaaccaatcat |
16464443 |
T |
|
| Q |
101 |
aaaacaatcctaagttgccaaaatgataaagacagttagctgaacgagaggttgacaccacact |
164 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
16464444 |
-aaacaattctaagttgccaaaatgat--agacagttagctgaatgagaggttgacaccacact |
16464504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 44950284 - 44950366
Alignment:
| Q |
1 |
aatttcctcaaccaatgccaattctgttctgtacacaaacatcaagcaaaatacaacacatgtaaagatctcaaatttcacaa |
83 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||| |
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| T |
44950284 |
aatttcctcaactaatgccaattctgttctgtacacaaacattaagaaaaatacagcacatgtaaagatctcaaattttacaa |
44950366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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