View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_low_120 (Length: 265)
Name: NF0836_low_120
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_120 |
 | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0189 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 25467 - 25257
Alignment:
| Q |
31 |
gtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctatttatcattatcctaatatttctcgtaacatatatga |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25467 |
gtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctatttatcattatcctaatatttctcgtaacatatatga |
25368 |
T |
|
| Q |
131 |
tatcgaatatgtgaacagaagtcttaaagtgctgaaccaaaaaacttgcataagattaattgtgcaagttacatatataacttacctcgatgaggcttta |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25367 |
tatcgaatatgtgaacagaagtcttaaagtgctgaaccaaaaaacttgaataagattaattgtgcaagttacatatataacttacctcgatgaggcttta |
25268 |
T |
|
| Q |
231 |
agttgcttcat |
241 |
Q |
| |
|
||||||||||| |
|
|
| T |
25267 |
agttgcttcat |
25257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 6927544 - 6927641
Alignment:
| Q |
37 |
aggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatcctaatatttctcgtaacatatatgatat |
133 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
6927544 |
aggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcataatattttttgtaacatatctgatat |
6927641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 14539310 - 14539407
Alignment:
| Q |
37 |
aggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatcctaatatttctcgtaacatatatgatat |
133 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
14539310 |
aggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcataatattttttgtaacatatctgatat |
14539407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 502801 - 502898
Alignment:
| Q |
37 |
aggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatcctaatatttctcgtaacatatatgatat |
133 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
502801 |
aggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcataatattttttgtaacatatctgatat |
502898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 17254509 - 17254606
Alignment:
| Q |
37 |
aggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatcctaatatttctcgtaacatatatgatat |
133 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
17254509 |
aggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcataatattttttgtaacatatctgatat |
17254606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 20374630 - 20374533
Alignment:
| Q |
37 |
aggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatcctaatatttctcgtaacatatatgatat |
133 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||| ||||||| ||||||||||||| ||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
20374630 |
aggatacatatgtatcctcgattgaaagattaatttataatctgcatttatcttctatattatcattatcataatattttttgtaacatatttgatat |
20374533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 20855545 - 20855642
Alignment:
| Q |
37 |
aggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatcctaatatttctcgtaacatatatgatat |
133 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| |||||| | | ||||||||| |||||| |
|
|
| T |
20855545 |
aggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcataatatcttttgtaacatatctgatat |
20855642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 888 times since January 2019
Visitors: 6037