View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_121 (Length: 264)
Name: NF0836_low_121
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 3747067 - 3746855
Alignment:
| Q |
14 |
cacagaggaaagtcattcactagtttaaggtggtagtgacattagta--actaactaatgaatgtgcttattagtatattagtgtttttaattccagact |
111 |
Q |
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| T |
3747067 |
cacagaggaaagtcattcactagtttaaggtggtagtgatagtgccattagtaactaatgaatgtgcttattagtatattcgtctttttaattccagact |
3746968 |
T |
|
| Q |
112 |
ctattgttctatatgtagtgataaatgctctattcaatttaaataaaatagtgtcacctggagttgtagtgactgatagagtttcatttgaattaaaaat |
211 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3746967 |
ctattgttctatatgtagtgataaatgttctattcaatttaaataaaatagtgtcacctggagttgtagtgactgatagagtttcatttgaattaaaaat |
3746868 |
T |
|
| Q |
212 |
ttatgagttgaat |
224 |
Q |
| |
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||||||||||||| |
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| T |
3746867 |
ttatgagttgaat |
3746855 |
T |
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