View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_126 (Length: 259)

Name: NF0836_low_126
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_126
NF0836_low_126
[»] chr4 (9 HSPs)
chr4 (36-244)||(4011958-4012167)
chr4 (36-125)||(4003479-4003568)
chr4 (36-120)||(3952844-3952928)
chr4 (36-132)||(3812170-3812266)
chr4 (36-110)||(4026715-4026789)
chr4 (39-132)||(3821746-3821839)
chr4 (36-132)||(3988368-3988464)
chr4 (163-217)||(4026848-4026902)
chr4 (45-121)||(4220990-4221066)
[»] chr5 (1 HSPs)
chr5 (36-132)||(13399320-13399416)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 4011958 - 4012167
Alignment:
Q  36 atgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaacnn 135  Q
    ||||| ||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||      
T  4011958 atgtcttcacctctaaagcttacaaaaacatcatcctttgattggggagaaatgtttgacggtgccttttctgctacagccttcaattcaataagaacga 4012057  T
Q  136 nnnnncttaggttcttcataaaaacttagatctctataacattaacaaaatacaacaacaatt-aaaaaatgttactacttaattatcaaaaagtgatgc 234  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||||||||||| |    
T  4012058 aaaaacttaggttcttcataaaaacttagatctctataacattaacaaaatacaacaacaattaaaaaaaatttactacttaatcatcaaaaagtgattc 4012157  T
Q  235 tattcatatc 244  Q
    ||||||||||    
T  4012158 tattcatatc 4012167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 4003479 - 4003568
Alignment:
Q  36 atgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaattta 125  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||||||||  |||||||  |||||||||||||||| |||||||||||    
T  4003479 atgtcctcgcccctaaagcttacaaaaacatcatactttaattggggagcatcgtttgacattgccttttctgctacacccttcaattta 4003568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 3952928 - 3952844
Alignment:
Q  36 atgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttca 120  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||||| | ||||||||  || ||||||||||||| ||||||    
T  3952928 atgtcctctcccctaaagcttacaaaaacatcatactttgattcgggagaattgtttgacattgtcttttctgctacacccttca 3952844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 3812170 - 3812266
Alignment:
Q  36 atgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 132  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||| | |||||| |  | || ||||||||||| ||||||| ||| ||||||    
T  3812170 atgtcctcgcccctaaagcttacaaaaacatcatactttgattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaa 3812266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 4026715 - 4026789
Alignment:
Q  36 atgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgct 110  Q
    |||||||||||||||||| |||| ||| |||||||||||| ||| |||||| |||| |||  |||||||||||||    
T  4026715 atgtcctcacccctaaagtttacgaaaacatcatactttggttgaggagcattgttagacattgccttttctgct 4026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 3821746 - 3821839
Alignment:
Q  39 tcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 132  Q
    ||||| |||||||||||||||||| ||||||||||| |||| |||| | |||||| |  | || ||||||||||| ||||||| ||| ||||||    
T  3821746 tcctcgcccctaaagcttacaaaaacatcatactttaattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaa 3821839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 3988368 - 3988464
Alignment:
Q  36 atgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 132  Q
    |||||||  ||||||||||| |||||| ||||||| ||||||||||||||  || |||||  || ||||||| ||||| ||||||| ||| ||||||    
T  3988368 atgtccttgcccctaaagctcacaaaaacatcatattttgattggggagcgttggttgacattgacttttctcctacacccttcaacttattaacaa 3988464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 4026848 - 4026902
Alignment:
Q  163 agatctctataacattaacaaaatacaacaacaattaaaaaatgttactacttaa 217  Q
    |||| |||||||||||||||||||||| ||| | |||| ||||||||||||||||    
T  4026848 agatgtctataacattaacaaaatacagcaaaatttaataaatgttactacttaa 4026902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 4220990 - 4221066
Alignment:
Q  45 cccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaa 121  Q
    |||||||||||||||||| ||||| |||||||||  |||| | ||||||||  ||| ||||||||| || |||||||    
T  4220990 cccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttcaa 4221066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 13399320 - 13399416
Alignment:
Q  36 atgtcctcacccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 132  Q
    ||||||||||||||||||||||||||| |||| ||  |||||||||||||| |  |||||  ||| ||||| |||| | ||||||| ||| ||||||    
T  13399320 atgtcctcacccctaaagcttacaaaaacatcgtatattgattggggagcatttcttgacactgctttttcagctatacccttcaacttattaacaa 13399416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 209 times since January 2019
Visitors: 6046