View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_13 (Length: 661)
Name: NF0836_low_13
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_13 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 612; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 30 - 661
Target Start/End: Original strand, 30950779 - 30951410
Alignment:
| Q |
30 |
ctcataccttccatgcttaaagtcatccactcattttctcctcgtaaaagactaataaatcttaattcatagtaaatcttagcattactatgttcacacc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30950779 |
ctcataccttccatgcttaaagtcatccactcattttctcctcgtaaaagactaataaatcttaattcatagtaaatcttagcattactatgttcacacc |
30950878 |
T |
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| Q |
130 |
gtgtaagatttatattcaaatgaggcctagtatataatatacaatttcatacaaatattaccacatatcaccattatcaccaaatgatattccttcaagt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
30950879 |
gtgtaagatttatattcaaatgaggcctagtatataatatacaatttcatacaaatataaccacatatcaccattatcatcaaatgatattccttcaagt |
30950978 |
T |
|
| Q |
230 |
ctcattccattacggtaaacctcaactaaacattatcaccattatcttgttcttaattaccactgctcaatctggtaatccaaaatttgaggcatgcact |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30950979 |
ctcattccattacggtaaacctcaactaaacattatcaccattatcttgttcttaattaccactgctcaatctggtaatccaaaatttgaggcatgtact |
30951078 |
T |
|
| Q |
330 |
cctcaaacctgtggaaaaggtccctccataaagtatcccttctggattccttatcaacaagattcattttgtggctatccacaatttgagatcacttgca |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30951079 |
cctcaaacctgtggaaaaggtccctccataaagtatcccttctggattccttatcaacaagattcattttgtggctatccacaatttgagatcacttgca |
30951178 |
T |
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| Q |
430 |
agaacaacaatccaattctcaaaacctcaaattatgaccttatagtaaaaactatctcttactcaagttcttcttttattgcatccaacttagctgtcta |
529 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30951179 |
agaacaacaatccaattctcaaaacctcaaattatgatcttatagtaaaaactatctcttactcaaattcttcttttattgcatccaacttagctgtcta |
30951278 |
T |
|
| Q |
530 |
tgaagacaagtgtcctgctcctatatataattacagccttgcccttgatcaaaccccatttacctatagttctgaaaattctaacctctctttcttctat |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30951279 |
tgaagacaagtgtcctgctcctatatataattacagccttgcccttgatcaaaccccatttacctatagttctgaaaattctaacctctctttcttctat |
30951378 |
T |
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| Q |
630 |
aactgtacaacagaacctatacattaccttac |
661 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30951379 |
aactgtacaacagaacctatacattaccttac |
30951410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 207 - 657
Target Start/End: Original strand, 31015297 - 31015741
Alignment:
| Q |
207 |
caccaaatgatattccttcaagtctcattccattacggtaaacctcaactaaacattatcaccattatcttgttcttaattaccactgctcaatctggta |
306 |
Q |
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|||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||| |||||| ||||||||| |||||| || |
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| T |
31015297 |
caccaaatgagattccttcaagtctcattccataacaataaacatcaactaaacattatcaccatcatcttattcttagttaccactgtccaatctatta |
31015396 |
T |
|
| Q |
307 |
atccaaaatttgaggcatgcactcctcaaacctgtggaaaaggtccctccataaagtatcccttctggattccttatcaacaagattcattttgtggcta |
406 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |
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| T |
31015397 |
atccaaaatttgaggcatgcacacctcaaacctgtggaaaaggtccttccataaagtatcctttctggattccttttcaacaagactcattttgtggcta |
31015496 |
T |
|
| Q |
407 |
tccacaatttgagatcacttgcaagaacaacaatccaattctcaaaacctcaaattatgaccttatagtaaaaactatctcttactcaagttcttctttt |
506 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| |||||| |
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| T |
31015497 |
tccacaatttgagatcacttgcatgaacaacaatccaattctcaaaacctcaaattatgacctattagtaaaaaacatctcgtactcaaattcgtctttt |
31015596 |
T |
|
| Q |
507 |
attgcatccaacttagctgtctatgaagacaagtgtcctgctcctatatataattacagccttgcccttgatcaaaccccatttacctatagttctgaaa |
606 |
Q |
| |
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|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||| |||||||||||| |||||||| ||||||| ||||| |
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| T |
31015597 |
attgcatccaacttagatgtctatgaagaaaactgtcctgctcctatgtataattacag------ccttgatcaaactccatttacatatagttttgaaa |
31015690 |
T |
|
| Q |
607 |
attctaacctctctttcttctataactgtacaacagaacctatacattacc |
657 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31015691 |
attccaacctctctttcttctataactgtacaacagaacctatagattacc |
31015741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 31014302 - 31014381
Alignment:
| Q |
46 |
ttaaagtcatccactcattttctcctcgtaaaagactaataaatcttaattcatagtaaatcttagca-ttactatgttcaca |
127 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||| | |||||||||||||| |
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| T |
31014302 |
ttaaagtcatccactcattttctcctttgaaaagactaataaatttcaattca---taaatcttagtatttactatgttcaca |
31014381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 31003379 - 31003438
Alignment:
| Q |
133 |
taagatttatattcaaatgaggcctagtatataatatacaatttcatacaaatattaccaca |
194 |
Q |
| |
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||||||| ||||||||||| ||||| |||| |||||||||||||||||||||| |||||| |
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| T |
31003379 |
taagattactattcaaatgaagcctattata--atatacaatttcatacaaatataaccaca |
31003438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 31003091 - 31003170
Alignment:
| Q |
46 |
ttaaagtcatccactcattttctcctcgtaaaagactaataaatcttaattcatagtaaatcttagcattactatgttcacac |
128 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||| |||| | |||||| |||||||||| ||||| | |||||||| |
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| T |
31003091 |
ttaaagtcatccattcattttctcctacgaaaagactaaaaaatttcaattca---taaatcttagtattaccacgttcacac |
31003170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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